Man pages for DanOvando/spasm
SPatial Age Structured Model (SPASM)
| approx_spr | 'approx_spr' aproximates equilibrium SPR from mean f across... |
| calc_density_gradient | calculate density gradient |
| calculate_recruits | 'calcualte_recruits' calculates recruits as a function of... |
| catch_target | 'catch_target' finds the right effort to produce a target... |
| create_fish | create_fish |
| create_fleet | create_fleet |
| create_manager | create manager |
| determine_effort | determine_effort |
| distribute_fleet | 'distribute_fleet' moves the fishing fleet around |
| estimate_costs | estimate costs that produce a given B/Bmsy open access |
| estimate_costs2 | estimate costs that produce a given B/Bmsy open access |
| estimate_msy | Title |
| fit_lbspr | 'fit_lbspr' |
| generate_length_at_age_key | generate_length_to_age_key |
| generate_timeseries | Generate a distribution of values over time |
| Get_traits | Get Traits |
| grow_and_die | 'grow_and_die' runs growth mortality and fishing |
| lbspr_lite | 'lbspr_lite' runs a simplified version of LBSPR assuming... |
| length_to_age | length_to_age |
| logistic_curve | calculate probabilities from a logistic curve |
| move_fish | 'move_fish' moves fish via a movement function |
| move_foo | move function |
| mpa_counterfactual | run mpa experiment |
| pipe | Pipe operator |
| plot_spasm | Plot Spasm |
| run_assessments | Title |
| run_catch_curve | 'run_catch_curve' runs a weighted catch curve on spasm data |
| sample_lengths | sample_lenghts |
| sim_fishery | 'sim_fishery' simulates an age structured spatially explicit... |
| sim_sampling | sim_sampling |
| strain_dlas | 'strain_dlas' test sensitivity of dlas to input parameters |
| tune_for_depletion | Tune for Depletion |
| update_fish | update_fish |
| update_fleet | update_fleet |
