Man pages for DepMap-Analytics/ADAM2
Adaptive Daisy Model
| ADAM2.CalculateBayesianfactor | Calculate the Log transformed Bayesian Factor given a bimodal... |
| ADAM2.coreFitnessGenes | Calculate the Core Fitness genes given the binary dependency... |
| ADAM2.coreFitnessGenesWrapper | Calculate the Core Fitness genes, starting from the binary... |
| ADAM2.empiricalOdds | Empirical odds of number of fitness genes per number of cell... |
| ADAM2.generateNullModel | Generate null profile of number of fitness genes across fixed... |
| ADAM2.panessprofile | Calculate profile of number of fitness genes across fixed... |
| ADAM2.PercentileAverageCF | Calculate the Core Fitness genes using the Average... |
| ADAM2.PercentileCF | Calculate the Core Fitness genes using the 90th-percentile... |
| ADAM2.randomisedepMat | Binary matrix randomisation preserving column totals |
| ADAM2.setEssentialGenes | Set reference set of predefined essential genes |
| ADAM2.SlopeCF | Calculate the Core Fitness genes using linear modeling of the... |
| ADAM2.tradeoffEO_TPR | Calculate ADAM model threshold |
| ADAM2.truePositiveRate | Profile of True Positive Rates |
| curated_BAGEL_essential | Predefined essential core set |
| exampleDepMat | Binary dependency map of 17,995 genes for 32 cell lines |
| exampleSBFData | Quantitative dependency map of 17,995 genes for 31 cell lines |
