| comb | Combinations of loci. |
| LD | Compute linkage disequilibrium (LD) |
| LD_mult | Compute linkage disequilibrium (LD) among several loci |
| LDtools | Computation of linkage disequilibrium from biallelic markers. |
| LP | Compute linkage phase similarity |
| map | Genetic map |
| population | A population for examples in LD computations. |
| sliding_window | Compute summary statistics on a sliding window |
| transform_geno | Transform genotypes |
| X | Haplotype data |
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