API for Drizzle-Zhang/scMAGIC
scMAGIC (Single Cell classification Model based on Auto-generated marker Genes and sImilarity Calculation)
| Global functions | |
|---|---|
| .cluster_increase_speed | Source code |
| .cluster_sc | Source code |
| .cluster_sc_one_out | Source code |
| .combine_tags | Source code Source code |
| .confirm_label | Source code |
| .confirm_label_auc | Source code |
| .cutoff_AUC | Source code |
| .cutoff_GMM_add_neg | Source code |
| .find_markers_1 | Source code |
| .find_markers_cell | Source code |
| .find_markers_cell_1 | Source code |
| .find_markers_cell_cosg | Source code |
| .find_markers_first | Source code |
| .find_markers_sc_2 | Source code |
| .find_markers_sc_cell | Source code |
| .find_markers_sc_cell_2 | Source code |
| .find_markers_sc_cell_cosg | Source code |
| .find_markers_second | Source code |
| .get_cor | Source code |
| .get_high_variance_genes | Source code |
| .get_log_p_sc_given_ref | Source code |
| .get_tag_max | Source code |
| .imoprt_outgroup | Source code |
| .one_confirm_label | Source code |
| .one_cutoff_AUC | Source code |
| .one_get_corr | Source code |
| .one_multinomial | Source code |
| generate_ref | Source code |
| getDEgeneF | Source code |
| get_overlap_genes | Source code |
| scMAGIC | Man page Source code |
| scMAGIC_Seurat | Source code |
| scMAGIC_atlas | Source code |
| transformHomoloGene | Source code Source code |
