Files in DrylandEcology/rSW2metrics
Calculate Ecohydrological Metrics from SOILWAT2 Simulations
.Rbuildignore
.gitattributes
.github/workflows/check-standard.yaml
.github/workflows/lint.yaml
.github/workflows/test-coverage.yaml
.lintr
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/Extractions_Main.R
R/Functions_AcrossYears.R
R/Functions_Collect_Inputs.R
R/Functions_Metrics_001_SEUG.R
R/Functions_Metrics_002_newRR.R
R/Functions_Metrics_003_ATlinkages.R
R/Functions_Metrics_004_Recruitment.R
R/Functions_Metrics_005_TranspirationSeasonality.R
R/Functions_Metrics_006_Quarterly.R
R/Functions_Metrics_007_Vegetation.R
R/Functions_Metrics_008_SW2toTable.R
R/Functions_Metrics_009_DailyClim.R
R/Functions_Selfdescribing.R
R/Functions_Supporting.R
R/rSW2metrics-defunct.R
R/rSW2metrics-deprecated.R
R/rSW2metrics-package.R
R/zzz.R
README.md
exec/Project_Parameters.R
exec/Script_Shell_Extracting_rSW2metrics.sh
exec/Script_to_Extract_Metric.R
inst/WORDLIST
man/SW2toTable.Rd
man/aggs_across_years.Rd
man/calc_SWA_mm.Rd
man/calc_SWP_MPa.Rd
man/calc_climatology.Rd
man/calc_soillayer_weights.Rd
man/check_soillayer_availability.Rd
man/determine_sw2_sim_time.Rd
man/determine_used_soillayers.Rd
man/extract_metrics.Rd
man/fun_across_years.Rd
man/get_values_from_sw2.Rd
man/inputcollectors.Rd
man/list_all_input_collectors.Rd
man/list_all_metrics.Rd
man/list_soil_variables.Rd
man/list_subannual_timesteps.Rd
man/metrics.Rd
man/process_arguments.Rd
man/rSW2metrics-defunct.Rd
man/rSW2metrics.Rd
man/shorten_run_names.Rd
tests/spelling.R
tests/test_data/v5.0/ref_metric_AI.rds
tests/test_data/v5.0/ref_metric_CWD.rds
tests/test_data/v5.0/ref_metric_Climate_annual.rds
tests/test_data/v5.0/ref_metric_Climate_monthly.rds
tests/test_data/v5.0/ref_metric_Climate_quarterly.rds
tests/test_data/v5.0/ref_metric_CorTP_Annual.rds
tests/test_data/v5.0/ref_metric_CorTempPPT.rds
tests/test_data/v5.0/ref_metric_DDDat5C0to020cm30bar_quarterly.rds
tests/test_data/v5.0/ref_metric_DDDat5C0to030cm30bar.rds
tests/test_data/v5.0/ref_metric_DDDat5C0to100cm30bar.rds
tests/test_data/v5.0/ref_metric_DDDat5C0to100cm30bar_quarterly.rds
tests/test_data/v5.0/ref_metric_DR_JJA.rds
tests/test_data/v5.0/ref_metric_DR_annual.rds
tests/test_data/v5.0/ref_metric_DR_daily.rds
tests/test_data/v5.0/ref_metric_DR_monthly.rds
tests/test_data/v5.0/ref_metric_DSIat0to100cm15bar.rds
tests/test_data/v5.0/ref_metric_DSIat0to100cm30bar.rds
tests/test_data/v5.0/ref_metric_DrySoilDays_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_DrySoilDays_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_ET_annual.rds
tests/test_data/v5.0/ref_metric_ET_monthly.rds
tests/test_data/v5.0/ref_metric_Evaporation_Seasonal.rds
tests/test_data/v5.0/ref_metric_ExtremeShortTermDryStress_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_ExtremeShortTermDryStress_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_FrostDaysAtNeg5C.rds
tests/test_data/v5.0/ref_metric_FrostDays_Seasonal.rds
tests/test_data/v5.0/ref_metric_NonDrySWA_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_NonDrySWA_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_PET_Seasonal.rds
tests/test_data/v5.0/ref_metric_PPT_JJA.rds
tests/test_data/v5.0/ref_metric_PPT_Seasonal.rds
tests/test_data/v5.0/ref_metric_PPT_daily.rds
tests/test_data/v5.0/ref_metric_PPT_dailyClim.rds
tests/test_data/v5.0/ref_metric_PPT_monthlyClim.rds
tests/test_data/v5.0/ref_metric_RR2022predictors_annual.rds
tests/test_data/v5.0/ref_metric_RR2022predictors_annualClim.rds
tests/test_data/v5.0/ref_metric_Radiation_annual.rds
tests/test_data/v5.0/ref_metric_Radiation_monthly.rds
tests/test_data/v5.0/ref_metric_RecruitmentIndex_v4.rds
tests/test_data/v5.0/ref_metric_RecruitmentIndex_v5.rds
tests/test_data/v5.0/ref_metric_SMTRs.rds
tests/test_data/v5.0/ref_metric_SW2toTable_daily.rds
tests/test_data/v5.0/ref_metric_SWA_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_SWA_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_SWAat0to020cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat0to020cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat0to020cm39bar_dailyClim.rds
tests/test_data/v5.0/ref_metric_SWAat0to020to100cm39bar_quarterly.rds
tests/test_data/v5.0/ref_metric_SWAat0to100cm30bar.rds
tests/test_data/v5.0/ref_metric_SWAat0to100cm39bar.rds
tests/test_data/v5.0/ref_metric_SWAat0to100cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat0to100cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat20to040cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat20to040cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat20to100cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat20to100cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat20to100cm39bar_dailyClim.rds
tests/test_data/v5.0/ref_metric_SWAat40to060cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat40to060cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat60to080cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat60to080cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWAat80to100cm39bar_JJA.rds
tests/test_data/v5.0/ref_metric_SWAat80to100cm39bar_daily.rds
tests/test_data/v5.0/ref_metric_SWP_SoilLayers_MeanMonthly.rds
tests/test_data/v5.0/ref_metric_SWPat0to020cm_dailyClim.rds
tests/test_data/v5.0/ref_metric_SWPat20to100cm_dailyClim.rds
tests/test_data/v5.0/ref_metric_SemiDryDuration_Annual_top50cm.rds
tests/test_data/v5.0/ref_metric_SemiDryDuration_Annual_wholeprofile.rds
tests/test_data/v5.0/ref_metric_TDDat5C.rds
tests/test_data/v5.0/ref_metric_TDDat5C_quarterly.rds
tests/test_data/v5.0/ref_metric_TEPET_daily.rds
tests/test_data/v5.0/ref_metric_TemperatureMax_Seasonal.rds
tests/test_data/v5.0/ref_metric_TemperatureMean_Seasonal.rds
tests/test_data/v5.0/ref_metric_TemperatureMin_Seasonal.rds
tests/test_data/v5.0/ref_metric_Tmean_JJA.rds
tests/test_data/v5.0/ref_metric_Tmean_daily.rds
tests/test_data/v5.0/ref_metric_Tmean_dailyClim.rds
tests/test_data/v5.0/ref_metric_Tmean_monthly.rds
tests/test_data/v5.0/ref_metric_Tmean_monthlyClim.rds
tests/test_data/v5.0/ref_metric_TranspirationPeaks_v6.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v1.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v2.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v3.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v4.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v5.rds
tests/test_data/v5.0/ref_metric_TranspirationSeasonality_v6.rds
tests/test_data/v5.0/ref_metric_Transpiration_Seasonal.rds
tests/test_data/v5.0/ref_metric_VWC_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_VWC_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_WDDat5C0to020cm15bar_quarterly.rds
tests/test_data/v5.0/ref_metric_WDDat5C0to100cm15bar.rds
tests/test_data/v5.0/ref_metric_WDDat5C0to100cm15bar_quarterly.rds
tests/test_data/v5.0/ref_metric_WetSoilDays_Seasonal_top50cm.rds
tests/test_data/v5.0/ref_metric_WetSoilDays_Seasonal_wholeprofile.rds
tests/test_data/v5.0/ref_metric_land_cover_v1.rds
tests/test_data/v5.0/ref_metric_land_cover_v2.rds
tests/test_data/v5.0/ref_metric_veg_biomass_annual_v1.rds
tests/test_data/v5.0/ref_metric_veg_biomass_annual_v2.rds
tests/test_data/v5.0/ref_metric_veg_biomass_monthly_v1.rds
tests/test_data/v5.0/ref_metric_veg_biomass_monthly_v2.rds
tests/test_data/v5.1/ref_metric_CWD.rds
tests/test_data/v5.1/ref_metric_Climate_annual.rds
tests/test_data/v5.1/ref_metric_Climate_monthly.rds
tests/test_data/v5.1/ref_metric_DDDat5C0to020cm30bar_quarterly.rds
tests/test_data/v5.1/ref_metric_DDDat5C0to030cm30bar.rds
tests/test_data/v5.1/ref_metric_DDDat5C0to100cm30bar.rds
tests/test_data/v5.1/ref_metric_DDDat5C0to100cm30bar_quarterly.rds
tests/test_data/v5.1/ref_metric_DR_JJA.rds
tests/test_data/v5.1/ref_metric_DR_annual.rds
tests/test_data/v5.1/ref_metric_DR_daily.rds
tests/test_data/v5.1/ref_metric_DR_monthly.rds
tests/test_data/v5.1/ref_metric_DSIat0to100cm15bar.rds
tests/test_data/v5.1/ref_metric_DSIat0to100cm30bar.rds
tests/test_data/v5.1/ref_metric_DrySoilDays_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_DrySoilDays_Seasonal_wholeprofile.rds
tests/test_data/v5.1/ref_metric_ET_annual.rds
tests/test_data/v5.1/ref_metric_ET_monthly.rds
tests/test_data/v5.1/ref_metric_Evaporation_Seasonal.rds
tests/test_data/v5.1/ref_metric_ExtremeShortTermDryStress_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_ExtremeShortTermDryStress_Seasonal_wholeprofile.rds
tests/test_data/v5.1/ref_metric_NonDrySWA_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_NonDrySWA_Seasonal_wholeprofile.rds
tests/test_data/v5.1/ref_metric_RR2022predictors_annual.rds
tests/test_data/v5.1/ref_metric_RR2022predictors_annualClim.rds
tests/test_data/v5.1/ref_metric_RecruitmentIndex_v4.rds
tests/test_data/v5.1/ref_metric_RecruitmentIndex_v5.rds
tests/test_data/v5.1/ref_metric_SMTRs.rds
tests/test_data/v5.1/ref_metric_SWA_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_SWA_Seasonal_wholeprofile.rds
tests/test_data/v5.1/ref_metric_SWAat0to020cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat0to020cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat0to020cm39bar_dailyClim.rds
tests/test_data/v5.1/ref_metric_SWAat0to020to100cm39bar_quarterly.rds
tests/test_data/v5.1/ref_metric_SWAat0to100cm30bar.rds
tests/test_data/v5.1/ref_metric_SWAat0to100cm39bar.rds
tests/test_data/v5.1/ref_metric_SWAat0to100cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat0to100cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat20to040cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat20to040cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat20to100cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat20to100cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat20to100cm39bar_dailyClim.rds
tests/test_data/v5.1/ref_metric_SWAat40to060cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat40to060cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat60to080cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat60to080cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWAat80to100cm39bar_JJA.rds
tests/test_data/v5.1/ref_metric_SWAat80to100cm39bar_daily.rds
tests/test_data/v5.1/ref_metric_SWP_SoilLayers_MeanMonthly.rds
tests/test_data/v5.1/ref_metric_SWPat0to020cm_dailyClim.rds
tests/test_data/v5.1/ref_metric_SWPat20to100cm_dailyClim.rds
tests/test_data/v5.1/ref_metric_SemiDryDuration_Annual_top50cm.rds
tests/test_data/v5.1/ref_metric_SemiDryDuration_Annual_wholeprofile.rds
tests/test_data/v5.1/ref_metric_TEPET_daily.rds
tests/test_data/v5.1/ref_metric_TranspirationPeaks_v6.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v1.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v2.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v3.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v4.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v5.rds
tests/test_data/v5.1/ref_metric_TranspirationSeasonality_v6.rds
tests/test_data/v5.1/ref_metric_Transpiration_Seasonal.rds
tests/test_data/v5.1/ref_metric_VWC_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_VWC_Seasonal_wholeprofile.rds
tests/test_data/v5.1/ref_metric_WDDat5C0to020cm15bar_quarterly.rds
tests/test_data/v5.1/ref_metric_WDDat5C0to100cm15bar.rds
tests/test_data/v5.1/ref_metric_WDDat5C0to100cm15bar_quarterly.rds
tests/test_data/v5.1/ref_metric_WetSoilDays_Seasonal_top50cm.rds
tests/test_data/v5.1/ref_metric_WetSoilDays_Seasonal_wholeprofile.rds
tests/testthat.R
tests/testthat/test_climatologies.R
tests/testthat/test_formatting_values.R
tests/testthat/test_function_interfaces.R
tests/testthat/test_metrics.R
tests/testthat/test_peaks.R
tests/testthat/test_soildepth.R
tests/testthat/test_time.R
tests/testthat/test_user_interface.R
