Files in Ecological-Complexity-Lab/infomap_ecology_package
Community Detection using Infomap, Inspired by Ecological Networks
.DS_Store
.Rbuildignore
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.gitignore
DESCRIPTION
Infomap
Infomap.zip
NAMESPACE
R/.DS_Store
R/NMI.R
R/check_infomap.R
R/create_infomap_linklist.R
R/gg_color_hue.R
R/infomapecology.R
R/install_infomap.R
R/kongsfjorden_links-data.R
R/kongsfjorden_nodes-data.R
R/otago_links-data.R
R/otago_nodes-data.R
R/plot_modular_matrix.R
R/plot_multilayer_alluvial.R
R/plot_multilayer_modules.R
R/plot_signif.R
R/run_infomap_monolayer.R
R/run_infomap_multilayer.R
R/shuffle_infomap.R
R/siberia1982_matrix.R
R/siberia1983_matrix.R
R/siberia1984_matrix.R
R/siberia1985_matrix.R
R/siberia1986_matrix.R
R/siberia1987_matrix.R
R/siberia_interlayer.R
R/siberia_nodes.R
R/tur2016-data.R
README.md
code_from_paper/.DS_Store
code_from_paper/gillaranz.csv
code_from_paper/hierarcical_structure_ex_kongsfjord.R
code_from_paper/infomap_ecology_main.R
code_from_paper/infomap_vs_Q.R
data/.DS_Store
data/kongsfjorden_links.RData
data/kongsfjorden_nodes.RData
data/otago_links.RData
data/otago_nodes.RData
data/siberia1982_7_links.rda
data/siberia1982_7_nodes.rda
data/siberia1982_matrix.rda
data/siberia1983_matrix.rda
data/siberia1984_matrix.rda
data/siberia1985_matrix.rda
data/siberia1986_matrix.rda
data/siberia1987_matrix.rda
data/siberia_interlayer.rda
data/siberia_nodes.rda
data/tur2016.RData
docs/Infomap
docs/about.html
docs/bipartite.html
docs/bipartite_files/figure-html/Bipartite_1-1.png
docs/ecomplab.png
docs/flows.html
docs/hypothesis_test.html
docs/hypothesis_test_files/figure-html/hypothesis_1-1.png
docs/hypothesis_test_files/figure-html/hypothesis_1-2.png
docs/hypothesis_test_files/figure-html/hypothesis_2-1.png
docs/hypothesis_test_files/figure-html/hypothesis_4-1.png
docs/hypothesis_test_files/figure-html/hypothesis_4-2.png
docs/index.html
docs/installation.html
docs/logos.png
docs/logos_6.png
docs/logos_new31.jpg
docs/monolayer_heirarchical.html
docs/monolayer_heirarchical_files/figure-html/monolayer_heirarchical_2-1.png
docs/monolayer_heirarchical_files/figure-html/monolayer_heirarchical_2-2.png
docs/monolayer_node_attributes.html
docs/monolayer_node_attributes_files/figure-html/monolayer_node_attribut_2-1.png
docs/multilayer_interlayer_emln.html
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docs/multilayer_interlayer_emln_files/figure-html/multilayer_inter_2-2.png
docs/multilayer_relax_emln.html
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docs/otago_node_attributes.txt
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docs_old/_config.yml
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docs_old/installation.md
docs_old/monolayer_heirarchical.md
docs_old/monolayer_node_attributes.md
docs_old/multilayer_interlayer.md
docs_old/multilayer_relax.md
infomap_ecology_package.Rproj
man/.DS_Store
man/NMI.Rd
man/check_infomap.Rd
man/create_infomap_linklist.Rd
man/gg_color_hue.Rd
man/infomap_link_list.Rd
man/infomap_monolayer.Rd
man/infomap_multilayer.Rd
man/infomapecology.Rd
man/install_infomap.Rd
man/kongsfjorden_links.Rd
man/kongsfjorden_nodes.Rd
man/otago_links.Rd
man/otago_nodes.Rd
man/plot_modular_matrix.Rd
man/plot_multilayer_alluvial.Rd
man/plot_multilayer_modules.Rd
man/plot_signif.Rd
man/run_infomap_monolayer.Rd
man/run_infomap_multilayer.Rd
man/shuffle_infomap.Rd
man/siberia1982_matrix.Rd
man/siberia1983_matrix.Rd
man/siberia1984_matrix.Rd
man/siberia1985_matrix.Rd
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man/siberia_interlayer.Rd
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man/tur2016.Rd
multilayer_example.csv
readme badges.R
website_source/.DS_Store
website_source/Infomap
website_source/_site.yml
website_source/about.Rmd
website_source/bipartite.Rmd
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website_source/flows.Rmd
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website_source/logos.png
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website_source/make_site.R
website_source/monolayer_heirarchical.Rmd
website_source/monolayer_node_attributes.Rmd
website_source/multilayer_interlayer_emln.Rmd
website_source/multilayer_relax_emln.Rmd
website_source/otago_node_attributes.txt
