Man pages for Ecological-Complexity-Lab/infomap_ecology_package
Community Detection using Infomap, Inspired by Ecological Networks
| check_infomap | Check if Infomap's standalone file is installed. |
| create_infomap_linklist | Create a link list for Infomap |
| gg_color_hue | Generate colors for ggplot |
| infomapecology | infomapecology: A package for running Infomap, inspired by... |
| infomap_link_list | An object of class infomap_link_list |
| infomap_monolayer | An object of class infomap_monolayer |
| infomap_multilayer | An object of class infomap_multilayer |
| install_infomap | A wrapper to install Infomap's standalone file. |
| kongsfjorden_links | Kongsfjorden food web: links |
| kongsfjorden_nodes | Kongsfjorden food web: nodes |
| NMI | Normalized mutual information |
| otago_links | Otago food web: links |
| otago_nodes | Otago food web: nodes |
| plot_modular_matrix | Plot a matrix with colored interactions by modules |
| plot_multilayer_alluvial | Alluvial plot for multilayer network |
| plot_multilayer_modules | Plot modules across layers for multilayer networks |
| plot_signif | Plot histograms for randomizations |
| run_infomap_monolayer | Run Infomap for monolayer networks with an option to compare... |
| run_infomap_multilayer | Run Infomap for multilayer networks |
| shuffle_infomap | Shuffle a network and return linklists for Infomap (beta) |
| siberia1982_matrix | Siberia 1982 host-parasite temporal matrix |
| siberia1983_matrix | Siberia 1983 host-parasite temporal matrix |
| siberia1984_matrix | Siberia 1984 host-parasite temporal matrix |
| siberia1985_matrix | Siberia 1985 host-parasite temporal matrix |
| siberia1986_matrix | Siberia 1986 host-parasite temporal matrix |
| siberia1987_matrix | Siberia 1987 host-parasite temporal matrix |
| siberia_interlayer | Siberia interlayer edges |
| siberia_nodes | Host-parasite temporal multilayer network: nodes |
| tur2016 | Pollen movement data |
