Man pages for Elisa89m/PDSP
Phenotypic Drug Similarity Prediction
| AP_sim2comp | Structure Similarity between two new compound |
| AP_simCMAP | Structure Similarity compound-CMAPset |
| DrugInfoCMAP-class | An S4 class to represent a Drug information set |
| geneExpr_upload | Gene Expression data upload when it is available |
| GetAllSimilarityScores | All similarity score computation among new compounds |
| GetAllSimilarityScoresCMAP | All similarity score computation between two new compound and... |
| GetATCcodeScore | ATC code score similarity between a new compound and a set of... |
| GetGeneExprScore | Gene Expression similarity between two new compound and... |
| GetKEGGScore | KEGG data score similarity between a new compound and... |
| GetLitteratureCo_occ | co-occurrence similarity between two new compound and... |
| get_pmid | get PMID file from PubMed |
| get_sdf | Get sdf file from PubChem and conversion of the sdf in Atom... |
| LoadModelData | Predictive Model data and CMAP similarity data |
| LoadPackage | Import packages |
| makeResultsDirectory | Make result folder |
| OrderCompound | Order |
| PredictNewDrugSimilarity | Predicition of new drug similarity scores |
| readDrugInfo | Drug Information file reading |
| UploadAllData | Conncectivity map (CMAP) data and new chemical information |
