Files in EmilMiP/LTFHPlus
Implementation of LT-FH++

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

LTFHPlus.Rproj

NAMESPACE

NEWS.md R/Covariance_matrix_functions.R R/Estimate_liabilities.R R/Helper_functions.R R/Internal_functions.R R/LT-FH_gibbs.R R/LTFHPlus-package.R R/Outdated_covariance_matrix_functions.R R/Outdated_estimate_liabilitites.R R/RcppExports.R R/Simulate_under_LTM.R R/The_Gibbs_Sampler.R R/est_gen_liab_noFH_corr_trait.R R/prepare_LTFHPlus_input.R README.Rmd README.md

_pkgdown.yml

cran-comments.md

docs/404.html

docs/articles/FromCIPFamilyToLTFHPlusInput.html

docs/articles/FromTrioToFamilies.html

docs/articles/FromTrioToFamilies_files/figure-html/unnamed-chunk-4-1.png

docs/articles/LTFHPlus.html

docs/articles/LTFHPlusExample.html

docs/articles/LTFHPlusGraphExample.html

docs/articles/index.html

docs/articles/inputFormatExample.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/LTFHPlus-package.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/add_gen_liab_to_graph.html

docs/reference/add_missing_roles_for_proband.html

docs/reference/construct_aoo.html

docs/reference/construct_covmat.html

docs/reference/construct_covmat_multi.html

docs/reference/construct_covmat_single.html

docs/reference/construct_thresholds.html

docs/reference/convert_age_to_cir-1.png

docs/reference/convert_age_to_cir.html

docs/reference/convert_age_to_thresh-1.png

docs/reference/convert_age_to_thresh.html

docs/reference/convert_cir_to_age-1.png

docs/reference/convert_cir_to_age.html

docs/reference/convert_format.html

docs/reference/convert_liability_to_aoo-1.png

docs/reference/convert_liability_to_aoo-2.png

docs/reference/convert_liability_to_aoo.html

docs/reference/convert_observed_to_liability_scale.html

docs/reference/correct_positive_definite.html

docs/reference/correct_positive_definite_simplified.html

docs/reference/estimate_gen_liability.html

docs/reference/estimate_gen_liability_ltfh.html

docs/reference/estimate_liability.html

docs/reference/estimate_liability_multi.html

docs/reference/estimate_liability_prevalence.html

docs/reference/estimate_liability_single.html

docs/reference/generate_cov_matrix_noFH.html

docs/reference/get_all_combs.html

docs/reference/get_between_trait_cov.html

docs/reference/get_cov.html

docs/reference/get_full_cov.html

docs/reference/get_kinship.html

docs/reference/get_relatedness.html

docs/reference/graph_based_covariance_construction.html

docs/reference/graph_based_covariance_construction_multi.html

docs/reference/index.html

docs/reference/prepare_LTFHPlus_input.html

docs/reference/prepare_graph.html

docs/reference/rtmvnorm.gibbs.html

docs/reference/simulate_under_LTM.html

docs/reference/simulate_under_LTM_multi.html

docs/reference/simulate_under_LTM_single.html

docs/reference/truncated_normal_cdf-1.png

docs/reference/truncated_normal_cdf.html

docs/reference/validate_correlation_matrix.html

docs/reference/validate_proportion.html

docs/reference/validate_relatives.html

docs/sitemap.xml

man/LTFHPlus-package.Rd man/construct_covmat.Rd man/construct_covmat_multi.Rd man/construct_covmat_single.Rd man/convert_age_to_cir.Rd man/convert_age_to_thresh.Rd man/convert_cir_to_age.Rd man/convert_format.Rd man/convert_liability_to_aoo.Rd man/convert_observed_to_liability_scale.Rd man/correct_positive_definite.Rd man/estimate_gen_liability_ltfh.Rd man/estimate_liability.Rd man/estimate_liability_multi.Rd man/estimate_liability_single.Rd man/get_all_combs.Rd man/get_kinship.Rd man/get_relatedness.Rd man/graph_based_covariance_construction.Rd man/graph_based_covariance_construction_multi.Rd man/prepare_LTFHPlus_input.Rd man/prepare_graph.Rd man/rtmvnorm.gibbs.Rd man/simulate_under_LTM.Rd man/simulate_under_LTM_multi.Rd man/simulate_under_LTM_single.Rd man/truncated_normal_cdf.Rd

src/.gitignore

src/RcppExports.cpp

src/gibbs-sampler.cpp

tests/testthat.R tests/testthat/test-Covariance_matrix_functions.R tests/testthat/test-Helper_functions.R tests/testthat/test-gibbs-sampler.R

vignettes/.gitignore

vignettes/FromCIPFamilyToLTFHPlusInput.Rmd vignettes/FromTrioToFamilies.Rmd vignettes/LTFHPlus.Rmd vignettes/LTFHPlusExample.Rmd vignettes/LTFHPlusGraphExample.Rmd vignettes/inputFormatExample.Rmd

EmilMiP/LTFHPlus documentation built on June 13, 2024, 4:26 p.m.

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EmilMiP/LTFHPlus
Implementation of LT-FH++

Files in EmilMiP/LTFHPlus
Implementation of LT-FH++

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EmilMiP/LTFHPlus Implementation of LT-FH++

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EmilMiP/LTFHPlus
Implementation of LT-FH++

Files in EmilMiP/LTFHPlus
Implementation of LT-FH++