Files in EmilMiP/LTFHPlus
Implementation of LT-FH++
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LTFHPlus.Rproj
NAMESPACE
NEWS.md
R/Covariance_matrix_functions.R
R/Estimate_liabilities.R
R/Helper_functions.R
R/Internal_functions.R
R/LT-FH_gibbs.R
R/LTFHPlus-package.R
R/Outdated_covariance_matrix_functions.R
R/Outdated_estimate_liabilitites.R
R/RcppExports.R
R/Simulate_under_LTM.R
R/The_Gibbs_Sampler.R
R/est_gen_liab_noFH_corr_trait.R
R/graph_to_trio.R
R/prepare_LTFHPlus_input.R
README.Rmd
README.md
_pkgdown.yml
cran-comments.md
docs/404.html
docs/articles/FromCIPFamilyToLTFHPlusInput.html
docs/articles/FromTrioToFamilies.html
docs/articles/FromTrioToFamilies_files/figure-html/unnamed-chunk-4-1.png
docs/articles/FromTrioToFamilies_files/figure-html/unnamed-chunk-7-1.png
docs/articles/LTFHPlus.html
docs/articles/LTFHPlusExample.html
docs/articles/LTFHPlusGraphExample.html
docs/articles/index.html
docs/articles/inputFormatExample.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
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docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
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docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
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docs/reference/LTFHPlus.html
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docs/reference/add_missing_roles_for_proband.html
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docs/reference/construct_covmat_multi.html
docs/reference/construct_covmat_single.html
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docs/reference/convert_observed_to_liability_scale.html
docs/reference/correct_positive_definite.html
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docs/reference/estimate_gen_liability.html
docs/reference/estimate_gen_liability_ltfh.html
docs/reference/estimate_liability.html
docs/reference/estimate_liability_multi.html
docs/reference/estimate_liability_prevalence.html
docs/reference/estimate_liability_single.html
docs/reference/fixSexCoding.html
docs/reference/generate_cov_matrix_noFH.html
docs/reference/get_all_combs.html
docs/reference/get_between_trait_cov.html
docs/reference/get_cov.html
docs/reference/get_full_cov.html
docs/reference/get_kinship.html
docs/reference/get_relatedness.html
docs/reference/graph_based_covariance_construction.html
docs/reference/graph_based_covariance_construction_multi.html
docs/reference/graph_to_trio.html
docs/reference/index.html
docs/reference/prepare_LTFHPlus_input.html
docs/reference/prepare_graph.html
docs/reference/rtmvnorm.gibbs.html
docs/reference/simulate_under_LTM.html
docs/reference/simulate_under_LTM_multi.html
docs/reference/simulate_under_LTM_single.html
docs/reference/truncated_normal_cdf-1.png
docs/reference/truncated_normal_cdf.html
docs/reference/validate_correlation_matrix.html
docs/reference/validate_proportion.html
docs/reference/validate_relatives.html
docs/search.json
docs/sitemap.xml
man/LTFHPlus-package.Rd
man/construct_covmat.Rd
man/construct_covmat_multi.Rd
man/construct_covmat_single.Rd
man/convert_age_to_cir.Rd
man/convert_age_to_thresh.Rd
man/convert_cir_to_age.Rd
man/convert_format.Rd
man/convert_liability_to_aoo.Rd
man/convert_observed_to_liability_scale.Rd
man/correct_positive_definite.Rd
man/estimate_gen_liability_ltfh.Rd
man/estimate_liability.Rd
man/estimate_liability_multi.Rd
man/estimate_liability_single.Rd
man/fixSexCoding.Rd
man/get_all_combs.Rd
man/get_kinship.Rd
man/get_relatedness.Rd
man/graph_based_covariance_construction.Rd
man/graph_based_covariance_construction_multi.Rd
man/graph_to_trio.Rd
man/prepare_LTFHPlus_input.Rd
man/prepare_graph.Rd
man/rtmvnorm.gibbs.Rd
man/simulate_under_LTM.Rd
man/simulate_under_LTM_multi.Rd
man/simulate_under_LTM_single.Rd
man/truncated_normal_cdf.Rd
src/.gitignore
src/RcppExports.cpp
src/gibbs-sampler.cpp
tests/testthat.R
tests/testthat/test-Covariance_matrix_functions.R
tests/testthat/test-Helper_functions.R
tests/testthat/test-gibbs-sampler.R
vignettes/.gitignore
vignettes/FromCIPFamilyToLTFHPlusInput.Rmd
vignettes/FromTrioToFamilies.Rmd
vignettes/LTFHPlus.Rmd
vignettes/LTFHPlusExample.Rmd
vignettes/LTFHPlusGraphExample.Rmd
vignettes/inputFormatExample.Rmd
