Global functions | |
---|---|
.add_padding_to_pos | Source code |
.add_padding_unpaired | Source code |
.are_whole_numbers | Source code |
.assemble_sequences | Source code |
.checkValueValidity | Source code |
.check_trna_granges | Source code |
.check_trna_structure_ident | Source code |
.getAcceptorStem | Source code |
.getAnticodonLoop | Source code |
.getAnticodonStem | Source code |
.getDiscriminator | Source code |
.getDloop | Source code |
.getDprime3 | Source code |
.getDprime5 | Source code |
.getDstem | Source code |
.getTloop | Source code |
.getTstem | Source code |
.getVariableLoop | Source code |
.get_IRanges | Source code |
.get_IRanges2 | Source code |
.get_bulges | Source code |
.get_cca_ends | Source code |
.get_colour | Source code |
.get_features_bulged | Source code |
.get_features_dstem | Source code |
.get_features_length | Source code |
.get_features_mismatches | Source code |
.get_features_tstem | Source code |
.get_features_unpaired | Source code |
.get_features_valid | Source code |
.get_gc_content | Source code |
.get_hmm_score | Source code |
.get_ident_structures | Source code |
.get_infernal_score | Source code |
.get_introns | Source code |
.get_loop_positions | Source code |
.get_mismatches | Source code |
.get_name_in_parent | Source code |
.get_plot_w_scores | Source code |
.get_plot_wo_scores | Source code |
.get_potential_pseudogene | Source code |
.get_scan_score | Source code |
.get_score | Source code |
.get_secondary_structure_score | Source code |
.get_seq_lengths | Source code |
.get_start_end | Source code |
.get_str_lengths | Source code |
.get_structures_details | Source code |
.get_structures_length | Source code |
.get_tRNA_length | Source code |
.get_tRNA_structure_type | Source code |
.get_tRNA_structures | Source code |
.get_validity_of_structures | Source code |
.get_width | Source code |
.get_widths | Source code |
.has_invalid_char | Source code |
.is_a_bool | Source code |
.is_a_string | Source code |
.is_continous_evenly_spaced_c | Source code |
.is_non_empty_character | Source code |
.is_non_empty_string | Source code |
.join_list | Source code |
.local_max | Source code |
.local_min | Source code |
.local_min_max | Source code |
.onLoad | Source code |
.pad_Dloop | Source code |
.pad_center | Source code |
.pad_left | Source code |
.pad_outside | Source code |
.pad_right | Source code |
.pad_unpaired_in_stem_region | Source code |
.pad_variableLoop | Source code |
.subset_structure_c | Source code |
.subset_tRNA_loop | Source code |
.subset_tRNA_stem | Source code |
gettRNABasePairing | Man page |
gettRNABasePairing,GRanges-method | Man page |
gettRNAFeaturePlots | Man page |
gettRNAFeaturePlots,GRangesList-method | Man page |
gettRNALoopIDs | Man page |
gettRNALoopIDs,GRanges-method | Man page |
gettRNASummary | Man page |
gettRNASummary,GRanges-method | Man page |
gettRNASummary,GRangesList-method | Man page |
gettRNAstructureGRanges | Man page |
gettRNAstructureGRanges,GRanges-method | Man page |
gettRNAstructureSeqs | Man page |
gettRNAstructureSeqs,GRanges-method | Man page |
gr | Man page |
gr_eco | Man page |
gr_human | Man page |
gr_human2 | Man page |
hasAcceptorStem | Man page |
hasAcceptorStem,GRanges-method | Man page |
hasAnticodonLoop | Man page |
hasAnticodonLoop,GRanges-method | Man page |
hasAnticodonStem | Man page |
hasAnticodonStem,GRanges-method | Man page |
hasDStem | Man page |
hasDStem,GRanges-method | Man page |
hasDloop | Man page |
hasDloop,GRanges-method | Man page |
hasTStem | Man page |
hasTStem,GRanges-method | Man page |
hasTloop | Man page |
hasTloop,GRanges-method | Man page |
hasVariableLoop | Man page |
hasVariableLoop,GRanges-method | Man page |
istRNAGRanges | Man page |
istRNAGRanges,GRanges-method | Man page |
tRNA | Man page |
tRNA-data | Man page |
tRNA-package | Man page |
tRNA-subset | Man page |
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