API for FelixErnst/xtail
Genome-wide assessment of differential translations with ribosome profiling data
| Global functions | |
|---|---|
| .add_category_label | Source code |
| .add_xtail_results | Source code |
| .adjust_p | Source code |
| .build_DataFrame_with_NA_rows | Source code |
| .build_matrix_with_NA_rows | Source code |
| .combine_results | Source code |
| .estimate | Source code |
| .estimate_MLE_for_Beta | Source code |
| .estimate_size_factors_for_matrix | Source code |
| .fit_Beta | Source code |
| .fit_Nbinom_GLMs | Source code |
| .fit_Nbinom_GLMs_Optim | Source code |
| .get_base_means_and_variances | Source code |
| .get_nbinom_log_like | Source code |
| .get_size_factors | Source code |
| .get_xtail_dispersion_fit_function | Source code |
| .matrix_to_list | Source code |
| .new_xtail | Source code |
| .norm_mrna_rpf | Source code |
| .plot_scatter | Source code |
| .remove_zero_and_NA_rows | Source code |
| .rename_model_matrix_columns | Source code |
| .sanitize_rowData | Source code |
| .show_xtail | Source code |
| .valid_xtail | Source code |
| .xtail_test | Source code |
| .xtail_test_wrapper | Source code |
| addXtail | Man page |
| addXtail,SummarizedExperiment-method | Man page |
| boundFC | Source code |
| conditions,xtail-method | Man page |
| fitBeta2 | Source code |
| plotFCs | Man page |
| plotFCs,xtail-method | Man page |
| plotRs | Man page |
| plotRs,xtail-method | Man page |
| probDensity | Source code |
| probMatrix | Source code |
| probMatrixCI | Source code |
| resultsNum | Man page |
| resultsNum,xtail-method | Man page |
| resultsTable | Man page |
| resultsTable,xtail-method | Man page |
| runXtail | Man page |
| runXtail,SummarizedExperiment-method | Man page |
| summary | Man page Source code |
| summary.xtail | Man page Source code |
| volcanoPlot | Man page |
| volcanoPlot,xtail-method | Man page |
| write.xtail | Man page Source code |
| xtail | Man page Source code |
| xtail-accessors | Man page |
| xtail-class | Man page |
| xtail-package | Man page |
| xtail_test | Source code |
| xtaildata | Man page |
| xtailres | Man page |
