Files in FelixTheStudent/cellpypes
Cell Type Pipes for Single-Cell RNA Sequencing Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/classify.R
R/find_knn.R
R/neighbor_pooling.R
R/plots.R
R/pseudobulk.R
R/pype_from_seurat.R
R/pype_rule_template.R
R/rule.R
R/simulated_umis.R
README.Rmd
README.md
cran-comments.md
data-raw/simulated_umis.R
data/simulated_umis.rda
inst/CITATION
man-roxygen/cellpypes_obj.R
man-roxygen/classify_params.R
man-roxygen/handling_overlap.R
man-roxygen/knn_refine.R
man-roxygen/param_fast.R
man-roxygen/param_obj.R
man-roxygen/param_operator.R
man/class_to_deseq2.Rd
man/classify.Rd
man/evaluate_rule.Rd
man/feat.Rd
man/figures/01_CD3_MS4A1.gif
man/figures/02_hierarchy.gif
man/figures/README-feat-1.png
man/figures/README-pbmc2700.jpg
man/figures/README-pbmc_cd3e.png
man/figures/README-pbmc_rules-1.png
man/figures/README-quickstart-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-6-2.png
man/find_knn.Rd
man/is_classes.Rd
man/is_rules.Rd
man/knn_refine.Rd
man/plot_classes.Rd
man/plot_last.Rd
man/pool_across_neighbors.Rd
man/pseudobulk.Rd
man/pseudobulk_id.Rd
man/pype_code_template.Rd
man/pype_from_seurat.Rd
man/rule.Rd
man/simulated_umis.Rd
man/tree_ancestry.Rd
man/tree_descendants.Rd
man/tree_leaf_nodes.Rd
tests/testthat.R
tests/testthat/test-classify.R
tests/testthat/test-find_knn.R
tests/testthat/test-neighbor_pooling.R
tests/testthat/test-plots.R
tests/testthat/test-pseudobulk.R
tests/testthat/test-rule.R
tests/testthat/test-tree_leaf_nodes.R
