Files in FireGutter/geneference
Simulating and analysing genes with LT-FH
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Gibbs_sampler.R
R/To_ped.R
R/assign_phenotypes.R
R/calculate_cov.R
R/covmatrix.R
R/create_map.R
R/data.R
R/error_types.R
R/load_data.R
R/n_sibs.R
R/path_validation.R
R/plink_calls.R
R/quote_path.R
R/rmnorm.R
R/sim_fixed_family.R
R/sim_no_family.R
R/sim_random_family.R
R/sim_test.R
R/sim_varied_family.R
R/utils-pipe.R
R/visualisations.R
README.Rmd
README.md
_pkgdown.yml
data/data_for_testsim.rda
geneference.Rproj
man/analysis_association.Rd
man/assign_GWAX_phenotype.Rd
man/assign_ltfh_phenotype.Rd
man/augment_results.Rd
man/calculate_cov.Rd
man/calculate_error_types.Rd
man/compare_beta.Rd
man/convert_geno_file.Rd
man/covmatrix.Rd
man/create_map.Rd
man/data_for_testsim.Rd
man/figures/gibbs-pseudo.png
man/figures/intro_beta-comp.png
man/figures/intro_calcov.png
man/figures/intro_errtbl.png
man/figures/intro_manhattan.png
man/figures/intro_phist.png
man/figures/intro_pmgl.png
man/figures/intro_pqq.png
man/figures/logo.png
man/load_phenotypes.Rd
man/load_results.Rd
man/n_sibs.Rd
man/pipe.Rd
man/plot_estimates_vs_true.Rd
man/plot_manhattan.Rd
man/plot_pmgl_vs_true.Rd
man/plot_pval_QQ.Rd
man/plot_pval_hist.Rd
man/rmnorm.Rd
man/sim_fixed_family.Rd
man/sim_no_family.Rd
man/sim_random_family.Rd
man/sim_test.Rd
man/sim_varied_family.Rd
man/to_ped.Rd
tests/testthat.R
tests/testthat/sim_fixed_family.R
tests/testthat/test-covmatrix.R
tests/testthat/test-rmnorm.R
tests/testthat/test-sim_fixed_family.R
tests/testthat/test-sim_no_family.R
tests/testthat/test-sim_test.R
vignettes/.gitignore
vignettes/geneference.Rmd
vignettes/gibbs.Rmd
vignettes/liability-distribution.Rmd
vignettes/sim-benchmarks.Rmd
