.Rbuildignore
.github/.gitignore
.github/workflows/check-release.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/array_vector_conversions.R
R/basis_functions.R
R/cpmrf2d.R
R/example_data.R
R/family.R
R/fit_ghm.R
R/fit_icm.R
R/fit_sa.R
R/hmrfout.R
R/mrf2d.R
R/mrfi_class.R
R/mrfi_methods.R
R/mrfout.R
R/plot.R
R/pseudo_likelihood.R
R/rmrf.R
R/suf_stat.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/Z_potts.R
data-raw/examples.R
data/Z_potts.rda
data/bold5000.rda
data/field1.rda
data/hfield1.rda
data/theta_potts.rda
docs/404.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
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docs/apple-touch-icon.png
docs/articles/index.html
docs/articles/lattice.png
docs/articles/mrf2d-family.html
docs/articles/mrf2d-family_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/mrf2d-family_files/header-attrs-2.1/header-attrs.js
docs/articles/mrf2d-family_files/header-attrs-2.2/header-attrs.js
docs/articles/mrf2d-family_files/header-attrs-2.4/header-attrs.js
docs/articles/mrf2d.html
docs/articles/mrf2d_files/figure-html/ex_mrfi-1.png
docs/articles/mrf2d_files/figure-html/fit_sa_examples-1.png
docs/articles/mrf2d_files/figure-html/plots_examples-1.png
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docs/articles/mrf2d_files/figure-html/plots_examples-4.png
docs/articles/mrf2d_files/figure-html/unnamed-chunk-1-1.png
docs/articles/mrf2d_files/header-attrs-2.1/header-attrs.js
docs/articles/three-dimensions-on-mrf2d.html
docs/articles/three-dimensions-on-mrf2d_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/three-dimensions-on-mrf2d_files/figure-html/unnamed-chunk-11-1.png
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docs/articles/three-dimensions-on-mrf2d_files/figure-html/unnamed-chunk-9-1.png
docs/articles/three-dimensions-on-mrf2d_files/header-attrs-2.4/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Z_potts-1.png
docs/reference/Z_potts.html
docs/reference/basis_functions.html
docs/reference/bold5000.html
docs/reference/cpmrf2d.html
docs/reference/data_examples.html
docs/reference/dplot-1.png
docs/reference/dplot-2.png
docs/reference/dplot-3.png
docs/reference/dplot-4.png
docs/reference/dplot.html
docs/reference/figures/README-Y_example_plot-1.png
docs/reference/figures/README-Z_example_plot-1.png
docs/reference/figures/README-example_interacions-1.png
docs/reference/figures/README-example_interacions-2.png
docs/reference/figures/README-example_interacions-3.png
docs/reference/figures/README-plot_interaction-1.png
docs/reference/figures/README-results_plot-1.png
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docs/reference/figures/README-results_plot-3.png
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docs/reference/figures/animation_ising.gif
docs/reference/figures/logo.png
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docs/reference/fit_ghm-1.png
docs/reference/fit_ghm-2.png
docs/reference/fit_ghm.html
docs/reference/fit_icm.html
docs/reference/fit_pl.html
docs/reference/fit_sa-1.png
docs/reference/fit_sa.html
docs/reference/hmrfout.html
docs/reference/index.html
docs/reference/mrf2d-family.html
docs/reference/mrf2d-package.html
docs/reference/mrfi-class-1.png
docs/reference/mrfi-class-2.png
docs/reference/mrfi-class-3.png
docs/reference/mrfi-class.html
docs/reference/mrfi-operations.html
docs/reference/mrfi-subsetting.html
docs/reference/mrfi.html
docs/reference/mrfout.html
docs/reference/pl_mrf2d.html
docs/reference/plot.mrfi-1.png
docs/reference/plot.mrfi-2.png
docs/reference/plot.mrfi-3.png
docs/reference/plot.mrfi-4.png
docs/reference/plot.mrfi.html
docs/reference/rmrf2d-1.png
docs/reference/rmrf2d-2.png
docs/reference/rmrf2d-3.png
docs/reference/rmrf2d-4.png
docs/reference/rmrf2d-5.png
docs/reference/rmrf2d-6.png
docs/reference/rmrf2d.html
docs/reference/rmrf2d_mc.html
docs/reference/smr_array.html
docs/reference/smr_stat.html
docs/sitemap.xml
inst/CITATION
inst/REFERENCES.bib
man/Z_potts.Rd
man/basis_functions.Rd
man/bold5000.Rd
man/cpmrf2d.Rd
man/data_examples.Rd
man/dplot.Rd
man/figures/README-Y_example_plot-1.png
man/figures/README-Z_example_plot-1.png
man/figures/README-example_interacions-1.png
man/figures/README-example_interacions-2.png
man/figures/README-example_interacions-3.png
man/figures/README-plot_interaction-1.png
man/figures/README-results_plot-1.png
man/figures/README-results_plot-2.png
man/figures/README-results_plot-3.png
man/figures/animation_ising.gif
man/figures/logo.png
man/fit_ghm.Rd
man/fit_pl.Rd
man/fit_sa.Rd
man/hmrfout.Rd
man/mrf2d-family.Rd
man/mrf2d-package.Rd
man/mrfi-class.Rd
man/mrfout.Rd
man/pl_mrf2d.Rd
man/plot.mrfi.Rd
man/rmrf2d.Rd
man/rmrf2d_mc.Rd
man/smr_array.Rd
man/smr_stat.Rd
mrf2d.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/RcppExports.cpp
src/conditional_probability.cpp
src/gibbs_sampler_mrf.cpp
src/mrf2d.h
src/pairwise_counts.cpp
src/pseudo_likelihood.cpp
tests/testthat.R
tests/testthat/test-array_vector_conversions.R
tests/testthat/test-basis_functions.R
tests/testthat/test-cohist.R
tests/testthat/test-cp_mrf2d.R
tests/testthat/test-fit_ghm.R
tests/testthat/test-fit_icm.R
tests/testthat/test-fit_sa.R
tests/testthat/test-hmrfout.R
tests/testthat/test-mrfi_class.R
tests/testthat/test-mrfout.R
tests/testthat/test-plot.R
tests/testthat/test-pseudo_likelihood.R
tests/testthat/test-rmrf2d.R
tests/testthat/test-rmrf2d_mc.R
tests/testthat/test-smr_functions.R
tests/testthat/test-suf_stat.R
vignettes/.gitignore
vignettes/mrf2d-family.Rmd
vignettes/three-dimensions-on-mrf2d.Rmd