API for GEizaguirre/DMMD
DNA Methylation Motif Discovery (DMMD)
| Global functions | |
|---|---|
| CheckDifferencesInDistributions | Source code |
| CooMov | Source code |
| CountPOMs | Source code |
| CountPOMsIdx | Source code |
| CountPOMsPrn | Source code |
| CountPOMsPrnIdx | Source code |
| CountPOMsRes | Source code |
| CountPOMsResIdx | Source code |
| CreatePom | Source code |
| DMMD | Man page |
| DMMD-package | Man page |
| DNAMethylationMotifFinding | Source code |
| DelGaps | Source code |
| DelGapsTot | Source code |
| DiscoverMotif | Man page Source code |
| DiscoverOptimalMotifDisplacement | Man page Source code |
| ExtractBndMerge | Source code |
| ExtractFDR | Source code |
| ExtractFDRMerge | Source code |
| FDR | Source code |
| FreqVec | Source code |
| FuseSeq | Source code |
| Fusion | Source code |
| GenMetHst | Source code |
| GetCooChr | Source code |
| GetLen | Source code |
| GetLen2 | Source code |
| GetLen3 | Source code |
| HMDispBnd | Source code |
| HMDispDFDR | Source code |
| HMFDRDispLog | Source code |
| HSDispBnd | Source code |
| HSDispBndNotCount | Source code |
| HSDispFdr | Source code |
| IndBasSeq | Source code |
| IndBasSeqTot | Source code |
| IndBasSeqVector | Source code |
| IndexHtmlReport | Source code |
| LogoScanPlot | Source code |
| MatchMotifToGene | Source code |
| Normalization | Source code |
| PMV | Source code |
| PMVsToVector | Source code |
| POM | Source code |
| POMVec | Source code |
| POMsToVector | Source code |
| PWM | Source code |
| PomClu | Source code |
| ProneMet | Source code |
| ReadCooMet | Source code |
| ReadFasta | Source code |
| ReduceWords | Source code |
| ReportHtml | Source code |
| ResisMet | Source code |
| Rev | Source code |
| RevTot | Source code |
| Scan | Source code |
| ScanFast | Source code |
| ScanPar | Source code |
| ScanParFrag | Source code |
| ScanParFragTot | Source code |
| ScanSeqs | Source code |
| ScanSeqsFreq | Source code |
| ScanSeqsPar | Source code |
| SelSamples | Source code |
| SelSamples2 | Source code |
| WeiLogPMV | Source code |
| WeiLogPOM | Source code |
| WeiPOM | Source code |
| allTests | Source code Source code |
| c_bound_test_openmp | Source code |
| c_bound_test_seq | Source code |
| clusterProc | Source code |
| cpp_str_sort | Source code |
| dataIsVoidFdr | Source code |
| fdr_c | Source code |
| filtreadmdfile | Source code |
| find_strings_par | Source code |
| find_strings_seq | Source code |
| fuse_seqs_c | Source code |
| fuse_seqs_openmp | Source code |
| fuse_seqs_seq | Source code |
| genSeqs | Source code |
| get_methylation_coordinates_bedMethyl | Source code |
| intervals | Source code |
| mergeDMMDResults | Source code |
| scan_seqs_c | Source code |
| testsTFG | Source code |
| workerFunc | Source code |
