GSEA-MSigDB/GSEA_R
Gene Set Enrichment Analysis (GSEA)

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GSEA-MSigDB/GSEA_R: Gene Set Enrichment Analysis (GSEA)
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Man pages for GSEA-MSigDB/GSEA_R
Gene Set Enrichment Analysis (GSEA)

GSEARun Gene Set enrichment Analysis
GSEA.Analyze.SetsPerforms leading edge analysis of a GSEA result
GSEA.CollapseDatasetMaps user supplied identifiers to Gene Symbols
GSEA.ConsPlotPlots a heatmap of a consensus matrix
GSEA.EnrichmentScoreComputes the enrichment score of a gene set
GSEA.EnrichmentScore2Computes random permutation enrichment scores
GSEA.Gct2FrameReads .GCT file into a data frame for processing
GSEA.GeneRankingRanks genes according to the specified ranking metric
GSEA.HeatMapPlotProduce Heat Map for Genes in Dataset
GSEA.HeatMapPlot2Produces overlap heatmap for leading edge analysis
GSEA.NormalizeColsStandardize columns of a gene expression matrix
GSEA.NormalizeRowsStandardize rows of a gene expression matrix
GSEA.ReadCHIPFileRead gene symbol mappings from .CHIP file
GSEA.ReadClsFileRead phenotype assignments from .CLS file
GSEA.ThresholdSet thresholds for expression matrix
GSEA.VarFilterVariation filter pre-processing for gene expression matrix
GSEA.write.gctWrite output .GCT files
GSEA-MSigDB/GSEA_R documentation built on Nov. 30, 2021, 4:50 a.m.

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