Files in Haocan223/MetaGSCA
Meta Gene Set Co-expression Analysis
DESCRIPTION
MetaGSCA.Rproj
NAMESPACE
News
R/MetaGSCA.R
R/PWcTalk.R
R/PWcTalkNW.R
R/PWcTalkNWpre.R
R/PWsim.R
R/PWsimDichot.R
R/dichotGSAR.R
README.md
data/BRCA.RData
data/COAD.RData
data/HNSC.RData
data/KIRC.RData
data/KIRP.RData
data/LIHC.RData
data/LUAD.RData
data/LUSC.RData
data/PRAD.RData
data/STAD.RData
data/THCA.RData
data/input2PWcTalk.RData
data/meta.RData
docs/MetaGSCA_tutorial.html
docs/PathwaySource.txt
docs/SuppTab1_PathwaySource.pdf
docs/SuppTab1_PathwaySource.xlsx
inst/extdata/Aminosugars metabolism_Individual Dataset GSAR Results with Bootstrapping.csv
inst/extdata/Arginine and Proline metabolism.lst
inst/extdata/Arginine and Proline metabolism_GLMM_Meta Analysis for bootstrap p-value_Forest plot.png
inst/extdata/Arginine and Proline metabolism_Individual Dataset GSAR Results with Bootstrapping.csv
inst/extdata/Butanoate metabolism.lst
inst/extdata/Folate metabolism.lst
inst/extdata/Fructose and Mannose metabolism.lst
inst/extdata/Fructose galactose metabolism.lst
inst/extdata/GLMM warning.png
inst/extdata/GPCR GroupI metabotropic glutamate receptor signaling pathway.lst
inst/extdata/Galactose metabolism.lst
inst/extdata/Glutamic acid and Glutamine metabolism.lst
inst/extdata/Glycine and Serine metabolism.lst
inst/extdata/Inositol phosphate metabolism.lst
inst/extdata/KIRP.rds
inst/extdata/LIHC.rds
inst/extdata/Mannose metabolism.lst
inst/extdata/Metabotropic glutamate receptor group I pathway.lst
inst/extdata/Metabotropic glutamate receptor group II pathway.lst
inst/extdata/Metabotropic glutamate receptor group III pathway.lst
inst/extdata/Methionine and Cysteine metabolism.lst
inst/extdata/N-acetylglucosamine metabolism.lst
inst/extdata/Nicotinate and Nicotinamide metabolism.lst
inst/extdata/PWcTalk.png
inst/extdata/Porphyrin metabolism.lst
inst/extdata/Propanoate metabolism.lst
inst/extdata/Prostaglandin and Leukotriene metabolism.lst
inst/extdata/Purine nucleotides and Nucleosides metabolism.lst
inst/extdata/Pyrimidine Metabolism.lst
inst/extdata/Pyrimidine Nucleotides and Nucleosides metabolism.lst
inst/extdata/Pyruvate metabolism.lst
inst/extdata/Steroids metabolism.lst
inst/extdata/Tyrosine metabolism.lst
inst/extdata/Vitamin D metabolism and pathway.lst
inst/extdata/input2PWcTalk.real.csv
inst/extdata/input2PWcTalk.small.csv
inst/extdata/multiple.png
inst/extdata/pathway369.7z
inst/extdata/single.png
man/BRCA.Rd
man/GSAR_boot.Rd
man/MetaGSCA.Rd
man/PWcTalk.Rd
man/PWcTalkNW.Rd
man/PWcTalkNWpre.Rd
man/input2PWcTalk.Rd
man/meta.Rd
vignettes/MetaGSCA_tutorial.R
vignettes/MetaGSCA_tutorial.Rmd
