revdep/R_LISTENV_MAP_DEPRECATED=defunct/problems.md

In HenrikBengtsson/listenv: Environments Behaving (Almost) as Lists

aroma.core

• Version: 3.3.0
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2022-11-15 18:30:13 UTC
• Number of recursive dependencies: 70

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

future.apply

• Version: 1.10.0
• GitHub: https://github.com/HenrikBengtsson/future.apply
• Source code: https://github.com/cran/future.apply
• Date/Publication: 2022-11-05 08:50:02 UTC
• Number of recursive dependencies: 15

Run revdep_details(, "future.apply") for more info

Newly broken

• checking tests ... ``` Running ‘fold.R’ Running ‘future_apply.R’ Running ‘future_by.R’ Running ‘future_eapply.R’ Running ‘future_lapply,RNG.R’ Running ‘future_lapply,globals.R’ Running ‘future_lapply.R’ ERROR Running the tests in ‘tests/future_lapply.R’ failed. Last 50 lines of output: ... A 'listenv' vector with 1 element ('A').

  $b A 'listenv' vector with 2 elements ('A', 'B').

  y_c <- lapply(x_c, FUN = listenv::map) Error: 'FUN' is defunct. Use 'listenv::mapping()' instead. See help("Defunct") and help("listenv-defunct"). Execution halted ```

future.batchtools

• Version: 0.11.0
• GitHub: https://github.com/HenrikBengtsson/future.batchtools
• Source code: https://github.com/cran/future.batchtools
• Date/Publication: 2022-12-14 21:40:03 UTC
• Number of recursive dependencies: 38

Run revdep_details(, "future.batchtools") for more info

Newly broken

• checking tests ... ``` Running ‘BatchtoolsFuture,gc.R’ Running ‘BatchtoolsFuture.R’ Running ‘BatchtoolsFutureError.R’ Running ‘batchtools_custom.R’ Running ‘batchtools_hpc.R’ Running ‘batchtools_interactive.R’ Running ‘batchtools_local.R’ Running ‘batchtools_multicore.R’ Running ‘batchtools_ssh.R’ Running ‘batchtools_template.R’ ...

  $b A 'listenv' vector with 2 elements ('A', 'B').

  y0 <- lapply(x, FUN = listenv::map) Error: 'FUN' is defunct. Use 'listenv::mapping()' instead. See help("Defunct") and help("listenv-defunct"). Execution halted ```

future.callr

• Version: 0.8.1
• GitHub: https://github.com/HenrikBengtsson/future.callr
• Source code: https://github.com/cran/future.callr
• Date/Publication: 2022-12-14 17:10:09 UTC
• Number of recursive dependencies: 20

Run revdep_details(, "future.callr") for more info

Newly broken

• checking tests ... ``` Running ‘CallrFuture.R’ Running ‘callr,launch-failure.R’ Running ‘callr.R’ Running ‘demo.R’ Running ‘dotdotdot.R’ Running ‘future,labels.R’ Running ‘future,lazy.R’ Running ‘globals,formulas.R’ Running ‘globals,manual.R’ Running ‘globals,subassignment.R’ ...

  $b A 'listenv' vector with 2 elements ('A', 'B').

  y0 <- lapply(x, FUN = listenv::map) Error: 'FUN' is defunct. Use 'listenv::mapping()' instead. See help("Defunct") and help("listenv-defunct"). Execution halted ```

greed

• Version: 0.6.1
• GitHub: https://github.com/comeetie/greed
• Source code: https://github.com/cran/greed
• Date/Publication: 2022-10-03 22:00:05 UTC
• Number of recursive dependencies: 95

Run revdep_details(, "greed") for more info

In both

• checking installed package size ... NOTE installed size is 37.0Mb sub-directories of 1Mb or more: libs 34.8Mb

• checking data for non-ASCII characters ... NOTE Note: found 989 marked UTF-8 strings

signeR

• Version: 2.0.1
• GitHub: https://github.com/rvalieris/signeR
• Source code: https://github.com/cran/signeR
• Date/Publication: 2022-12-14
• Number of recursive dependencies: 242

Run revdep_details(, "signeR") for more info

In both

• checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: R 1.1Mb doc 4.7Mb

• checking R code for possible problems ... NOTE covariate: no visible binding for global variable ‘.’ denovo: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg19’ denovo: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg38’ explorepage: no visible binding for global variable ‘.’ fitting: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg19’ fitting: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg38’ ... ExposureCorrelation,SignExp-numeric: no visible binding for global variable ‘exposure’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘Feature’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘exposure’ Undefined global functions or variables: . BSgenome.Hsapiens.UCSC.hg19 BSgenome.Hsapiens.UCSC.hg38 Col Feature Frequency Row Samples Signatures alt<- exposure fc project sig sig_test

• checking Rd files ... NOTE prepare_Rd: cosmic_data.Rd:91-93: Dropping empty section \details prepare_Rd: cosmic_data.Rd:98-100: Dropping empty section \references prepare_Rd: cosmic_data.Rd:101-102: Dropping empty section \examples prepare_Rd: tcga_similarities.Rd:96-98: Dropping empty section \details prepare_Rd: tcga_similarities.Rd:99-101: Dropping empty section \source prepare_Rd: tcga_similarities.Rd:102-104: Dropping empty section \references prepare_Rd: tcga_similarities.Rd:105-106: Dropping empty section \examples prepare_Rd: tcga_tumors.Rd:18-20: Dropping empty section \details prepare_Rd: tcga_tumors.Rd:21-23: Dropping empty section \source prepare_Rd: tcga_tumors.Rd:24-26: Dropping empty section \references prepare_Rd: tcga_tumors.Rd:27-28: Dropping empty section \examples

HenrikBengtsson/listenv documentation built on Jan. 31, 2024, 9:08 a.m.