revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/README.md

In HenrikBengtsson/matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)

Platform

|field |value | |:--------|:-----------------------------------------------------| |version |R version 4.4.2 (2024-10-31) | |os |Rocky Linux 8.10 (Green Obsidian) | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/Los_Angeles | |date |2024-12-30 | |pandoc |3.6 @ /software/c4/cbi/software/pandoc-3.6/bin/pandoc |

Dependencies

|package |old |new |Δ | |:-----------|:-----|:----------|:--| |matrixStats |1.4.1 |1.4.1-9008 |* |

Revdeps

Failed to check (2)

|package |version |error |warning |note | |:-------------|:-------|:-----|:-------|:----| |flowWorkspace|4.18.0 |1 | | | |graper|1.22.0 |1 | | |

All (497)

|package |version |error |warning |note | |:-------------------------------|:-------|:-----|:-------|:----| |abcrf |1.9 | | |1 | |ablasso |1.0 | | | | |ACNE |0.9.1 | | | | |ActivityIndex |0.3.7 | | | | |adproclus |2.0.0 | | | | |airpart |1.14.0 | | |1 | |AlpsNMR |4.8.0 |1 | | | |AMARETTO|1.22.0 | |1 |4 | |amplican|1.28.0 | | |5 | |antiProfiles |1.46.0 | | | | |apollo |0.3.4 | | |1 | |aroma.affymetrix|3.2.2 | | |1 | |aroma.cn |1.7.1 | | | | |aroma.core|3.3.1 | | |1 | |aroma.light|3.36.0 | | |1 | |aSPU |1.50 | | | | |atena |1.12.0 | | | | |autonomics|1.14.6 | | |2 | |bage |0.7.4 | | |1 | |bahc |0.3.0 | | |1 | |Banksy |1.2.0 | | |2 | |BASiCS |2.18.0 | | |2 | |BatchQC |2.2.0 | | |1 | |BayesfMRI|0.3.11 | | |2 | |BayesianPlatformDesignTimeTrend|1.2.3 | | |2 | |BayesTwin |1.0 | | | | |bcf |2.0.2 | | |2 | |bigstep |1.1.1 | | | | |BindingSiteFinder |2.4.0 | | | | |bingat |1.3 | | |1 | |binsreg |1.1 | | | | |BioNERO |1.14.0 | | |2 | |biscuiteer|1.20.0 | |1 |3 | |blackbox|1.1.46 | | |1 | |BloodGen3Module|1.14.0 | |1 |1 | |bmm |1.0.1 | | |1 | |bnbc |1.28.0 | | |1 | |bnclassify|0.4.8 |1 | |1 | |bnem |1.14.0 | | |1 | |BREADR |1.0.2 | | | | |BRISC |1.0.6 | | | | |brms |2.22.0 | | |2 | |BSgenome|1.74.0 |1 |1 |3 | |bspcov |1.0.1 | | | | |BSW |0.1.1 | | |1 | |bulkAnalyseR|1.1.0 | | |1 | |bumphunter|1.48.0 | | |4 | |calmate |0.13.0 | | | | |Canek |0.2.5 | | | | |CARBayesST|4.0 | | |1 | |cardelino|1.8.0 | | |1 | |CATALYST|1.30.2 | | |2 | |causalOT|1.0.2 | | |2 | |CDI |1.4.0 | | |1 | |celda |1.22.0 | | |4 | |CelliD |1.14.0 | |1 |2 | |cellmigRation|1.14.0 | | |1 | |cellWise|2.5.3 | | |1 | |CEMiTool|1.30.0 | | |2 | |ChAMP |2.36.0 | |2 |6 | |ChemoSpec2D|0.5.0 |1 | | | |Chicago |1.34.0 | | | | |ChIPpeakAnno|3.40.0 |3 | |1 | |cifti |0.4.5 | | |1 | |CIPerm |0.2.3 | | | | |cliqueMS|1.20.0 | | |2 | |Clomial |1.42.0 | | | | |clusterExperiment|2.26.0 | |2 |6 | |clustifyr|1.18.0 | | |2 | |cmapR |1.18.0 | | |3 | |cna |3.6.2 | |1 |1 | |cnaOpt |0.5.2 | | | | |CNVScope|3.7.2 | | |3 | |coconots |1.1.3 | | | | |cohetsurr |1.0 | | | | |coin |1.4-3 | |1 | | |COINr |1.1.14 | | | | |cointmonitoR |0.1.0 | | | | |cointReg |0.2.0 | | | | |cola |2.12.0 | | |1 | |colorrepel |0.3.0 | | | | |compcodeR|1.42.0 | | |2 | |ComplexHeatmap|2.22.0 | | |1 | |condiments|1.14.0 | | |1 | |conformalbayes |0.1.2 | | | | |conquer |1.3.3 | | |1 | |consensus|1.24.0 | | |1 | |cophescan|1.4.1 | | |1 | |CopulaGAMM |0.4.1 | | | | |corrcoverage|1.2.1 | | |4 | |cosinor2 |0.2.1 | | | | |countts |0.1.0 | | | | |CpGFilter |1.1 | | | | |CRISPRball|1.2.0 | | |2 | |crlmm |1.64.0 | |1 |5 | |csdR |1.12.0 | | | | |cSEM |0.5.0 | | |2 | |CureDepCens |0.1.0 | | | | |cvCovEst |1.2.2 | | | | |cytofQC |1.6.0 | | |1 | |cytomapper|1.18.0 | | |2 | |cytoMEM |1.10.0 | | | | |DAMOCLES |2.3 | | | | |DCATS |1.4.0 | | |4 | |DCLEAR |1.0.13 | | | | |ddtlcm |0.2.1 | | |1 | |dearseq |1.18.0 | | |1 | |decompr |6.4.0 | | | | |deconvR |1.12.0 | | | | |DelayedMatrixStats|1.28.0 | | |1 | |DELocal |1.6.0 | | |1 | |DeMixT |1.22.0 | |3 |4 | |DepCens |0.2.3 | | | | |DepecheR|1.22.0 | | |2 | |DepInfeR |1.10.0 | | |-1 | |DEqMS |1.24.0 |-1 | |2 | |DESeq2 |1.46.0 | | |1 | |detrendr|0.6.15 | | |2 | |DHS.rates|0.9.2 | | |1 | |diffUTR |1.14.0 | | |2 | |Dino |1.12.0 | | |1 | |disbayes|1.1.0 |1 | |2 | |DiscoRhythm|1.22.0 | | |3 | |DisHet |1.0.0 | | | | |DMCFB |1.20.0 | | | | |dmrseq |1.26.0 | | |2 | |DMtest |1.0.0 | | | | |Doscheda|1.28.0 | | |2 | |doseR |1.22.0 | | | | |dplR |1.7.7 | | | | |DSWE |1.8.2 | | |1 | |dwp |1.1 | | |1 | |dynamicSDM |1.3.4 | | | | |eaf |2.5.1 | | |1 | |easier |1.12.0 | | |2 | |ecospat |4.1.1 | | | | |eGST |1.0.0 | | | | |EMDomics|2.36.0 | | |3 | |EMMAgeo |0.9.7 | | | | |ENmix |1.42.0 | | |1 | |EnrichedHeatmap|1.36.0 | | |1 | |EpiDISH |2.22.0 | |2 |1 | |epimutacions|1.10.0 |1 | |3 | |epistasisGA|1.8.0 | | |2 | |epivizrData |1.34.0 | | | | |eseis |0.8.0 | | |2 | |EstimationTools|4.0.0 | | |1 | |evaluomeR|1.22.0 | |3 |3 | |EventPointer|3.14.0 | | |3 | |ExceedanceTools |1.3.6 | | | | |ExCluster|1.24.0 | | |1 | |ExpHunterSuite|1.14.0 |1 | |3 | |ExpressionNormalizationWorkflow|1.32.0 | |2 |5 | |expss |0.11.6 | | |1 | |extraChIPs|1.10.0 | | |2 | |FADA |1.3.5 | | | | |fairsubset |1.0 | | | | |familial |1.0.7 | | | | |fastcpd |0.14.6 | | |1 | |FastPCS |0.1.4 | | |1 | |FastRCS |0.0.9 | | |1 | |FateID |0.2.2 | | | | |FDb.FANTOM4.promoters.hg19|1.0.0 | |1 |3 | |FEAST |1.14.0 | | |2 | |felp |0.6.0 | | | | |fergm |1.1.4 | | | | |fipp |1.0.0 | | |2 | |fishpond|2.12.0 |1 | |2 | |flexmsm |0.1.2 | | | | |flocker |1.0-0 | | | | |flowCore|2.18.0 | |4 |3 | |flowGraph|1.14.0 | | |3 | |flowWorkspace|4.18.0 |1 | | | |fMRItools |0.4.7 | | | | |footBayes|0.2.0 | | |1 | |FRASER |2.2.0 | |1 |4 | |funcharts|1.6.0 | | |1 | |funtooNorm|1.30.0 | |2 |2 | |GAD |2.0 | | | | |gap |1.6 | | |3 | |gcapc |1.30.0 | | | | |gDNAx |1.4.0 | | |1 | |GenEst |1.4.9 | | |1 | |geneticae|0.4.0 | | |1 | |GeneTonic|3.0.0 | | |1 | |genomation|1.38.0 | |1 |4 | |GenomAutomorphism|1.8.0 | |1 | | |geocmeans|0.3.4 | | |1 | |GeoThinneR |1.1.0 | | | | |geva |1.14.0 | |1 |1 | |ggdmc |0.2.6.0 | | |3 | |GGPA |1.18.0 | | |4 | |GJRM |0.2-6.7 | | |1 | |glmGamPoi|1.18.0 | | |2 | |GLMMadaptive |0.9-1 | | | | |glossa |1.0.0 | | | | |GNET2 |1.22.0 | | | | |GPGame |1.2.0 | | |1 | |GPUmatrix|1.0.2 | |1 | | |grandR |0.2.5 | | | | |GRaNIE |1.10.0 | | |2 | |graper |1.22.0 |1 | | | |graphicalMCP |0.2.6 | | | | |GUIDEseq|1.36.0 | |1 |3 | |GUniFrac|1.8 | | |1 | |Gviz |1.50.0 | | |1 | |gwasurvivr |1.24.0 | | | | |GWENA |1.16.0 | |2 |1 | |HACSim |1.0.6-1 | | |2 | |haldensify |0.2.3 | | | | |Harman |1.34.0 | | |1 | |hbamr |2.3.2 | | |2 | |HDSpatialScan|1.0.4 | | |1 | |hermes |1.10.0 | | |1 | |HERON |1.4.0 | | | | |hipathia|3.6.0 | |1 |2 | |Hmsc |3.0-13 | | |1 | |Holomics|1.1.1 | | |2 | |HonestDiD |0.2.6 | | | | |hubEnsembles|0.1.9 | | |1 | |ICBioMark|0.1.4 | | |1 | |icpack |0.1.0 | | | | |IMIFA |2.2.0 | | | | |immApex |1.0.4 |3 | | | |ImpactEffectsize |0.7 | | | | |incidental|0.1 | | |1 | |InDisc |1.1.0 | | | | |iNETgrate|1.4.0 | |1 | | |InfiniumPurify|1.3.1 | | |1 | |Infusion |2.2.0 | | | | |iPath |1.12.0 | | |3 | |iperform |0.0.3 | | | | |irace |4.1 | |1 |1 | |iraceplot |2.0.0 | | | | |JMbayes2|0.5-0 | | |1 | |JointFPM |1.2.1 | | | | |jointseg |1.0.2 | | | | |kgschart|1.3.5 | | |1 | |kissDE |1.26.0 | |1 | | |kpmt |0.1.0 | | |1 | |latrend |1.6.1 | | | | |LDM |6.0.1 |2 | | | |ldsep |2.1.5 | | |2 | |lemur |1.4.0 | |1 |2 | |LFDREmpiricalBayes|1.0 | |1 | | |lfproQC |1.4.0 | | | | |liminal |0.1.2 | | | | |limorhyde |1.0.1 | | | | |Linnorm |2.30.0 | |1 |3 | |localgauss |0.41 | | | | |locaR |0.1.2 | | |-1 | |loo |2.8.0 | | | | |LS2Wstat |2.1-5 | | | | |LSAmitR |1.0-3 | | |2 | |lspartition|0.4 | | |1 | |ltmle |1.3-0 | | | | |Luminescence|0.9.26 | | |1 | |M3Drop |1.32.0 | | |4 | |maEndToEnd|2.26.0 |1 |1 |4 | |magpie |1.6.0 | |1 |2 | |maic |0.1.4 | | | | |MatrixGenerics|1.18.0 |1 | |1 | |matrixTests |0.2.3 | | | | |mbsts |3.0 | | | | |mcmcsae |0.7.8 | | |1 | |MEAL |1.36.0 |1 |2 |3 | |MEDseq |1.4.1 | | | | |memes |1.14.0 | |1 |1 | |metabCombiner|1.16.0 | | |1 | |MetabolicSurv|1.1.2 | | |1 | |metagenomeSeq|1.46.0 |1 | | | |metamicrobiomeR|1.2 | | |1 | |MetaNeighbor|1.26.0 | | |2 | |methrix |1.20.0 | | |1 | |MethylAid|1.40.0 | |1 | | |methylationArrayAnalysis|1.29.0 |1 |1 |3 | |methylumi|2.52.0 | | |8 | |mgcViz |0.1.11 | | | | |miclust |1.2.8 | | | | |MicrobiomeStat |1.2 | | | | |miesmuschel |0.0.4-2 | | | | |migest |2.0.4 | | |1 | |miloR |2.2.0 | | |3 | |MiMIR |1.5 | | | | |MinimumDistance|1.50.0 | |4 |4 | |miRecSurv|1.0.2 | | |1 | |mixOmics|6.30.0 | | |2 | |mnem |1.22.0 | | |1 | |moanin |1.14.0 |1 | |3 | |MOCHA |1.1.0 | | |1 | |MoEClust |1.5.2 | | | | |monocle |2.34.0 | |1 |2 | |moocore |0.1.2 | | |1 | |MOSim |2.2.0 | |1 |3 | |motifbreakR|2.20.0 |2 |1 |4 | |motifTestR |1.2.1 | | | | |mrfDepth|1.0.17 | | |1 | |msImpute |1.16.0 | | | | |msqrob2 |1.14.1 | | |2 | |mult.latent.reg|0.2.1 | | |1 | |MultiBD |0.2.0 | |1 |2 | |multinomialLogitMix |1.1 | | | | |multistateQTL|1.2.0 | | |1 | |multivarious |0.2.0 | | | | |muscat |1.20.0 | | |3 | |muscData|1.20.0 | |1 |3 | |mvgam |1.1.3 | | |3 | |mvpd |0.0.4 | | |1 | |mzipmed |1.4.0 | | |1 | |nandb |2.1.0 | | | | |NanoStringDiff|1.36.0 | |2 |2 | |nbconv |1.0.1 | | | | |nearBynding|1.16.0 | | |1 | |nempi |1.14.0 | | | | |nestedcv |0.7.12 | | | | |netZooR |1.10.0 |1 | |4 | |neurobase |1.32.4 | | | | |nn2poly |0.1.2 | | |1 | |nnSVG |1.10.0 | | |1 | |NormalyzerDE|1.24.0 | |1 |2 | |nparMD |0.2.1 | | | | |numbat |1.4.2 | | |3 | |obfuscatoR |0.2.2 | | | | |occupancy |1.2 | | | | |ODT |1.0.0 | | | | |omicplotR|1.26.0 | | |2 | |omicsPrint|1.26.0 |1 |1 |1 | |omicsViewer|1.10.0 | | |1 | |omicwas |0.8.0 | | | | |OncoBayes2|0.8-9 | | |5 | |OptHoldoutSize|0.1.0.0 | | |1 | |OptimalDesign|1.0.1 | | |2 | |Ostats |0.2.0 | | | | |OUTRIDER|1.24.0 | |1 |5 | |pandaR |1.38.0 | |2 |2 | |pARI |1.1.2 | | |1 | |PathoStat|1.32.0 | | |1 | |pcaMethods|1.98.0 | | |1 | |pecora |0.1.1 |1 | | | |penppml |0.2.3 | | |2 | |PepSetTest |1.0.0 | | | | |PepsNMR |1.24.0 | | |1 | |pgKDEsphere |1.0.1 | | | | |phosphonormalizer|1.30.0 | | |1 | |Pigengene|1.32.0 | |1 |3 | |PINSPlus |2.0.7 | | | | |pipeComp|1.16.0 | | |5 | |PlackettLuce|0.4.3 | | |1 | |pmp |1.18.0 | | |1 | |PolySTest|1.0.2 | |1 |3 | |POMaSPU |1.0.0 | | | | |posterior |1.6.0 | | | | |priorsense|1.0.4 | | |1 | |PRONE |1.0.0 | | |2 | |ProteoDisco|1.12.0 | |2 |3 | |ProteoMM|1.24.0 | | |1 | |PSCBS |0.67.0 | | | | |PSIM |0.1.0 | | | | |QDNAseq |1.42.0 | |1 | | |Qest |1.0.1 | | | | |QFeatures|1.16.0 | |1 |2 | |Qindex |0.1.7 | | | | |RAC |1.5.5 | | | | |RaceID |0.3.9 | | |1 | |rADA |1.1.9 |1 | |2 | |RadioGx |2.10.0 | | |2 | |ramr |1.14.0 | | | | |RandomForestsGLS |0.1.5 | | | | |randomGLM |1.10-1 | | | | |randomizationInference |1.0.4 | | | | |RBesT |1.7-4 | | |2 | |RCarb |0.1.6 | | | | |recommenderlab |1.0.6 | | | | |reconsi |1.18.0 | | | | |Rediscover |0.3.2 | | | | |regsem |1.9.5 | | |1 | |reservr |0.0.3 | | |2 | |RGCCA |3.0.3 | |1 | | |rhierbaps |1.1.4 | | | | |RHRT |1.0.1 | | | | |RiboDiPA|1.14.0 | | |2 | |RJcluster|3.2.4 | | |2 | |RNAmodR |1.20.0 | | |3 | |RNAseqQC |0.2.1 | | | | |RnBeads |2.24.0 | |1 |8 | |robustlm|0.1.0 | | |1 | |Rogue |2.1.6 | | | | |RolDE |1.10.0 | | | | |rpm |0.7-3 | | |1 | |RSquaredMI |0.2.0 | | | | |rsvddpd |1.0.0 | | |1 | |RTCC |0.1.1 | | | | |rTLsDeep |0.0.5 | | | | |rtrend |0.1.5 | | |1 | |rvec |0.0.7 | | | | |samr |3.0 | | |1 | |SANvi |0.1.1 | | |1 | |scDataviz|1.16.0 | | |1 | |scDesign3|1.4.0 | | |1 | |scDHA |1.2.2 | | |1 | |SCFA |1.16.0 | | | | |scHOT |1.18.0 | | | | |scISR |0.1.1 | | |1 | |scITD |1.0.4 | | | | |scmap |1.28.0 |1 | |3 | |scMET |1.8.0 | | |4 | |scMultiSim|1.2.0 | | |3 | |scone |1.30.0 | | |2 | |scp |1.16.0 | | |3 | |scPCA |1.20.0 | | |1 | |scPloidy |0.6.2 | | | | |scpoisson|0.0.1 | | |1 | |sctransform|0.4.1 | | |1 | |sechm |1.14.0 | | |2 | |seeds |0.9.1 | | |1 | |sensobol|1.1.5 | | |1 | |seqArchR|1.10.0 |2 | | | |Seurat |5.1.0 | | |3 | |SGP |2.2-0.0 | | | | |SIAMCAT |2.10.0 | | |3 | |SICtools|1.36.0 | |1 |3 | |sigminer|2.3.1 | | |1 | |SimBu |1.8.0 | | |2 | |simona |1.4.0 | | |2 | |simPIC |1.2.0 | | | | |simPop |2.1.3 | | |1 | |sindyr |0.2.4 | | | | |Single.mTEC.Transcriptomes|1.34.0 | |1 |2 | |singleCellTK|2.16.0 | | |2 | |singscore|1.26.0 | | |1 | |sizeMat |1.1.2 | | | | |slasso |1.0.0 | | |3 | |slingshot|2.14.0 | | |1 | |SpaceMarkers |1.2.1 | | | | |SpaNorm |1.0.0 | | |2 | |SPARRAfairness |0.0.0.2 | | | | |sparrow |1.12.0 | | |3 | |SparseArray|1.6.0 | | |1 | |sparseMatrixStats|1.18.0 | | |3 | |spatzie |1.12.0 | | |1 | |spdesign |0.0.5 | | | | |splatter|1.30.0 | | |1 | |SpliceWiz|1.8.0 | | |3 | |SPOTlight|1.10.0 | | |1 | |spqn |1.18.0 | | |1 | |SQI |0.1.0 | | | | |SRTsim |0.99.7 | | | | |stabiliser|1.0.6 | | |1 | |stability |0.6.0 | | | | |stagedtrees |2.3.0 | | | | |stapler |0.7.1 | | |1 | |staRdom |1.1.28 | | |1 | |statar |0.7.6 | | | | |stm |1.3.7 | |1 |1 | |stoppingrule |0.5.1 | | | | |sts |1.2 | | | | |summarytools|1.0.1 | |1 |1 | |sumR |0.4.15 | | | | |SuperCell|1.0.1 | | |1 | |surveyPrev|1.0.0 | | |2 | |susieR |0.12.35 | |1 | | |sva |3.54.0 | |1 | | |target |1.20.0 | | | | |TaxaNorm |2.4 | | | | |TCA |1.2.1 | | |3 | |templateICAr|0.9.1 | | |1 | |tenXplore |1.28.0 | | | | |ThurMod |1.1.11 | | | | |tidybulk|1.18.0 | | |3 | |TOAST |1.20.0 | | | | |TopDom |0.10.1 | | |1 | |topGO |2.58.0 | |1 |3 | |tradeSeq|1.20.0 | | |4 | |transmogR |1.2.0 | | | | |TRESS |1.12.0 | | |2 | |ttScreening |1.6 | | | | |tximport |1.34.0 | | | | |UBayFS |1.0 | | | | |Unico |0.1.0 | | | | |UPG |0.3.5 | | | | |VanillaICE|1.68.0 | | |5 | |variancePartition|1.36.2 |1 | |6 | |VaSP |1.18.0 | | |1 | |VICatMix |1.0 | | | | |Voyager |1.8.1 |1 | |2 | |vsclust |1.8.0 | |1 |4 | |wateRmelon|2.12.0 | |5 |5 | |WaverideR|0.3.2 | |1 |1 | |weakARMA |1.0.3 | | | | |WeMix |4.0.3 | | | | |WGCNA |1.73 | | | | |winputall|1.0.1 | | |2 | |WQM |0.1.4 | | |1 | |Wrench |1.24.0 | | | | |yarn |1.32.0 | | | | |zinbwave|1.28.0 | | |1 | |zitools |1.0.0 | |2 |2 |

HenrikBengtsson/matrixStats documentation built on Jan. 11, 2025, 7:46 p.m.