revdep/R_MATRIXSTATS_USENAMES_NA=defunct/README.md

In HenrikBengtsson/matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)

Platform

|field |value | |:--------|:---------------------------------------------------------| |version |R version 4.3.2 (2023-10-31) | |os |CentOS Linux 7 (Core) | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/Los_Angeles | |date |2023-11-02 | |pandoc |3.1.9 @ /software/c4/cbi/software/pandoc-3.1.9/bin/pandoc |

Dependencies

|package |old |new |Δ | |:-----------|:-----|:----------|:--| |matrixStats |1.0.0 |1.0.0-9006 |* |

Revdeps

Failed to check (3)

|package |version |error |warning |note | |:--------------|:-------|:-----|:-------|:----| |DeepBlueR|1.27.0 |1 | | | |ExpHunterSuite|1.8.0 |1 | | | |QDNAseq|1.38.0 |1 | | |

All (463)

|package |version |error |warning |note | |:-------------------------------|:-------|:-----|:-------|:----| |abcrf |1.9 | | |1 | |ACNE |0.9.0 | | | | |ActivityIndex |0.3.7 | | | | |airpart |1.10.0 | | | | |AlpsNMR |4.4.0 |1 | | | |AMARETTO|1.18.0 | |1 |4 | |amplican|1.24.0 | | |2 | |antiProfiles |1.42.0 | | | | |apollo |0.3.1 | | | | |arf |0.1.3 | | | | |aroma.affymetrix |3.2.1 | | | | |aroma.cn |1.7.0 | | | | |aroma.core|3.3.0 | | |1 | |aroma.light|3.32.0 | | |1 | |aSPU |1.50 | | | | |atena |1.8.0 | | | | |autonomics|1.9.0 |1 |1 |1 | |bahc |0.3.0 | | |1 | |BASiCS |2.14.0 | | |2 | |BatchQC |1.30.0 | |1 |1 | |BayesfMRI|0.3.5 | | |2 | |BayesianPlatformDesignTimeTrend|1.2.1 | | |2 | |BayesTwin |1.0 | | | | |baystability|0.1.0 | | |1 | |bigPint |1.15.0 |3 | |1 | |bigstep |1.1.1 | | | | |BindingSiteFinder |2.0.0 | | | | |bingat |1.3 | | |1 | |binsreg |1.0 | | | | |BioNERO |1.10.0 | | |1 | |biscuiteer|1.16.0 | |1 |3 | |blackbox|1.1.43 | | |1 | |BloodGen3Module|1.10.0 | |1 |1 | |bnbc |1.23.0 | |1 |1 | |bnclassify|0.4.7 |1 |1 |2 | |bnem |1.10.0 | | |1 | |BREADR |1.0.1 | | | | |BRISC |1.0.5 | | | | |brms |2.20.4 | | |2 | |BSgenome|1.70.0 |1 |1 |5 | |BSW |0.1.1 | | |1 | |bulkAnalyseR|1.1.0 | | |1 | |bumphunter|1.44.0 | | |4 | |calmate |0.13.0 | | | | |Canek |0.2.3 | | | | |CARBayesST|4.0 | | |1 | |cardelino|1.4.0 | | |1 | |CATALYST|1.26.0 | | |2 | |causalOT|0.1.2 | | |2 | |ccImpute|1.4.0 | | |2 | |celda |1.17.0 | | |3 | |CelliD |1.10.0 |3 |1 |2 | |cellmigRation |1.10.0 | | | | |cellWise|2.5.3 | | |1 | |CEMiTool|1.26.0 | | |2 | |ChAMP |2.30.0 | |2 |6 | |ChemoSpec2D|0.5.0 | |1 | | |Chicago |1.30.0 | | | | |ChIPpeakAnno|3.36.0 |3 | |3 | |chromswitch|1.22.0 | |1 | | |cifti |0.4.5 | | |1 | |CIPerm |0.2.3 | | | | |cliqueMS|1.16.0 | | |3 | |Clomial |1.38.0 | | | | |clusterExperiment|2.22.0 | |1 |5 | |clustifyr|1.14.0 | | |2 | |cmapR |1.14.0 | | |3 | |cna |3.5.4 | | |2 | |cnaOpt |0.5.2 | | | | |CNVScope|3.7.2 | | |2 | |coconots |1.1.3 | | | | |coin |1.4-3 | | |1 | |COINr |1.1.7 | | | | |cointmonitoR |0.1.0 | | | | |cointReg |0.2.0 | | | | |cola |2.8.0 | | |1 | |compcodeR|1.38.0 | | |1 | |ComplexHeatmap |2.18.0 | | | | |condiments|1.10.0 | | |1 | |conformalbayes |0.1.2 | | | | |conquer |1.3.3 | | |1 | |consensus |1.20.0 | | | | |consensusOV |1.24.0 | | | | |cophescan|1.3.2 | | |1 | |CopulaGAMM |0.3.0 | | | | |corrcoverage|1.2.1 | | |4 | |cosinor2 |0.2.1 | | | | |CpGFilter |1.1 | | | | |crlmm |1.60.0 | |1 |5 | |crossmeta|1.28.0 | | |2 | |csdR |1.8.0 | | | | |cSEM |0.5.0 | | |1 | |CureDepCens |0.1.0 | | | | |cvCovEst |1.2.1 | | | | |cytofQC |1.2.0 | | | | |cytomapper|1.14.0 | | |2 | |cytoMEM |1.6.0 | | | | |dagHMM |0.1.0 | | | | |DAMOCLES |2.3 | | | | |DCATS |1.0.0 | | |2 | |DCLEAR |1.0.13 | | | | |ddtlcm |0.1.1 | | | | |dearseq |1.14.0 | | | | |decompr |6.4.0 | | | | |deconvR |1.8.0 | | | | |DeepBlueR|1.27.0 |1 | | | |DelayedMatrixStats|1.24.0 | | |1 | |DELocal |1.2.0 |1 | |1 | |DeMixT |1.16.0 | |2 |4 | |DepCens |0.2.3 | | | | |DepecheR|1.18.0 | | |2 | |DepInfeR |1.6.0 | | | | |DEqMS |1.20.0 | | |2 | |DESeq2 |1.42.0 | | |1 | |detrendr|0.6.15 | | |2 | |DGCA |1.0.3 | | | | |DHS.rates|0.9.1 | | |1 | |diffUTR |1.10.0 | | |2 | |Dino |1.8.0 | | |1 | |disbayes|1.1.0 |1 | |2 | |DiscoRhythm|1.18.0 | | |3 | |DisHet |1.0.0 | | | | |DMCFB |1.14.0 |1 | | | |dmrseq |1.22.0 | | |1 | |DMtest |1.0.0 | | | | |Doscheda|1.24.0 | | |1 | |doseR |1.18.0 | | | | |dplR |1.7.5 | | | | |DSWE |1.6.3 | | |1 | |dwp |1.1 | | |1 | |dynamicSDM |1.3.3 | | | | |eaf |2.4.1 | | |1 | |easier |1.8.0 | | |2 | |ecospat |4.0.0 | |1 | | |eGST |1.0.0 | | | | |EMDomics|2.32.0 | | |2 | |EMMAgeo |0.9.7 | | | | |ENmix |1.38.01 | | |1 | |EnrichedHeatmap|1.32.0 | | |1 | |EpiDISH |2.18.0 | | |1 | |epimutacions|1.5.3 |1 | |1 | |epistasisGA|1.4.0 | | |1 | |epivizrData |1.30.0 | | | | |eseis |0.7.3 | | |1 | |EstimationTools |4.0.0 | | | | |evaluomeR|1.18.0 | | |3 | |EventPointer|3.10.0 | | |3 | |ExceedanceTools |1.3.6 | | | | |ExCluster|1.20.0 | | |1 | |ExpHunterSuite|1.8.0 |1 | | | |ExpressionNormalizationWorkflow|1.28.0 | |2 |4 | |expss |0.11.6 | | | | |extraChIPs|1.6.0 | | |2 | |FADA |1.3.5 | | | | |fairsubset |1.0 | | | | |familial |1.0.5 | | | | |FastPCS |0.1.3 | | |3 | |FastRCS |0.0.8 | | |3 | |fastverse|0.3.2 | | |1 | |FateID |0.2.2 | | | | |FDb.FANTOM4.promoters.hg19|1.0.0 | |1 |3 | |FEAST |1.10.0 | | |2 | |felp |0.3.0 | | | | |fergm |1.1.4 | | | | |fipp |1.0.0 | | |2 | |fishpond|2.8.0 |1 | |2 | |flexmsm |0.1.1 | | | | |flowCore|2.14.0 | |3 |4 | |flowGraph|1.10.0 | | |2 | |flowWorkspace|4.14.0 | |5 |7 | |fMRItools |0.3.3 | | | | |footBayes|0.2.0 | | |1 | |FRASER |1.14.0 | |1 |3 | |funcharts |1.3.2 | | | | |funtooNorm|1.26.0 | |2 | | |GAD |1.1.1 | | | | |gap |1.5-3 | | |3 | |gcapc |1.26.0 | | | | |GenEst |1.4.9 | | | | |geneticae|0.4.0 | | |1 | |GeneTonic|2.6.0 | | |2 | |genomation|1.34.0 | |1 |3 | |geocmeans|0.3.4 | | |1 | |geva |1.10.0 | |1 | | |ggdmc |0.2.6.0 | | |3 | |GGPA |1.14.0 | | |3 | |GJRM |0.2-6.4 | | |1 | |glmGamPoi|1.14.0 | | |2 | |GLMMadaptive |0.9-1 | | | | |GNET2 |1.18.0 | | | | |GPGame |1.2.0 | | | | |GPUmatrix|0.1.1 | |1 | | |grandR |0.2.2 | | | | |GRaNIE |1.6.1 | | |2 | |graper |1.18.0 | | |2 | |GUIDEseq|1.32.0 | | |5 | |GUniFrac |1.8 | | | | |Gviz |1.46.0 | | |1 | |gwasurvivr |1.20.0 | | | | |GWENA |1.12.0 | |2 |1 | |HACSim |1.0.6-1 | | |2 | |haldensify |0.2.3 | | | | |Harman |1.30.0 | | |1 | |hbamr |1.2.0 | | |2 | |HDSpatialScan|1.0.4 | | |1 | |hermes |1.6.0 |1 | | | |HERON |1.0.0 | | | | |hipathia|3.2.0 | |1 |2 | |Hmsc |3.0-13 | | | | |ICBioMark |0.1.4 | | | | |IMIFA |2.1.10 | | | | |ImpactEffectsize |0.6.2 | | | | |incidental |0.1 | | | | |InDisc |1.1.0 | | | | |iNETgrate|1.0.0 | |1 | | |InfiniumPurify|1.3.1 | | |1 | |Infusion |2.1.0 | | | | |IntOMICS|1.2.0 | |1 | | |iPath |1.8.0 | | |2 | |iraceplot |1.2 | | | | |JMbayes2|0.4-5 | | |1 | |jointseg |1.0.2 | | | | |kgschart|1.3.5 | | |1 | |kissDE |1.20.0 | | |1 | |kpmt |0.1.0 | | | | |latrend |1.5.1 | | |2 | |LDM |6.0.1 | | | | |ldsep |2.1.5 | | |2 | |lemur |1.0.2 | | |2 | |LFDREmpiricalBayes|1.0 | | |1 | |liger |2.0.1 | | |1 | |liminal |0.1.2 | | | | |limorhyde |1.0.1 | | | | |Linnorm |2.26.0 | |1 |1 | |localgauss |0.41 | | | | |locaR |0.1.2 | | | | |loo |2.6.0 | | | | |LS2Wstat |2.1-5 | | | | |LSAmitR |1.0-3 | | |2 | |lspartition|0.4 | | |1 | |ltmle |1.3-0 | | | | |Luminescence|0.9.22 | | |1 | |M3Drop |1.28.0 | |1 |3 | |maEndToEnd|2.22.0 | |1 |4 | |magpie |1.2.0 | | |1 | |maic |0.1.4 | | | | |MatrixGenerics|1.14.0 | | |1 | |matrixTests |0.2.3 | | | | |mbsts |3.0 | | | | |mcmcsae |0.7.5 | | |1 | |MEAL |1.32.0 |1 |3 |3 | |MEDseq |1.4.0 | | | | |memes |1.10.0 | |1 | | |metabCombiner |1.12.0 | | | | |MetabolicSurv |1.1.2 | | | | |metagene|2.31.0 |1 |1 |2 | |metagenomeSeq|1.43.0 |1 | | | |metamicrobiomeR|1.2 | | |1 | |MetaNeighbor|1.22.0 | |1 | | |MethReg |1.12.0 | |1 |4 | |methrix |1.16.0 | | |1 | |MethylAid|1.36.0 | |1 |1 | |methylationArrayAnalysis|1.24.0 |1 |1 |3 | |methylumi|2.48.0 | | |8 | |mgcViz |0.1.11 | | | | |miclust |1.2.8 | | | | |microbiomeExplorer|1.12.0 | | |1 | |MicrobiomeStat|1.1 | | |1 | |microsamplingDesign|1.0.8 | |1 |1 | |miesmuschel |0.0.3 | | | | |migest |2.0.3 | | |1 | |miloR |1.10.0 | | |3 | |MiMIR |1.4 | | | | |MinimumDistance|1.46.0 | |5 |4 | |miRecSurv |1.0.2 | | | | |mixOmics|6.26.0 | | |1 | |mnem |1.18.0 | | |1 | |moanin |1.10.0 |1 | |1 | |MOCHA |1.0.0 | | |2 | |MoEClust |1.5.1 | | | | |monocle |2.30.0 | |1 |2 | |MOSim |1.16.0 |1 | |1 | |motifbreakR|2.16.0 | |1 |2 | |mrfDepth|1.0.15 | | |1 | |msImpute |1.12.0 | | | | |msqrob2 |1.10.0 | | | | |MultiBD |0.2.0 | |1 |2 | |multinomialLogitMix |1.1 | | | | |muscat |1.16.0 | | |2 | |muscData|1.16.0 | |1 |2 | |mvpd |0.0.4 | | | | |mzipmed |1.4.0 | | | | |nandb |2.1.0 | | | | |NanoStringDiff|1.32.0 | |1 |2 | |nbconv |1.0.1 | | | | |nearBynding|1.12.0 | |1 |1 | |nempi |1.10.0 | | | | |nestedcv |0.7.0 | | | | |netZooR |1.6.0 |1 | |3 | |neurobase |1.32.3 | | | | |nnSVG |1.6.0 | | | | |NormalyzerDE|1.20.0 | | |1 | |nparMD |0.2.1 | | | | |numbat |1.3.2-1 | | |3 | |obfuscatoR |0.2.2 | | | | |occupancy |1.2 | | | | |omicplotR|1.22.0 | | |1 | |omicsPrint|1.22.0 | |1 |1 | |omicsViewer|1.6.0 | | |1 | |omicwas |0.8.0 | | | | |OncoBayes2|0.8-9 | | |4 | |OptHoldoutSize |0.1.0.0 | | | | |OptimalDesign|1.0.1 | | |2 | |Ostats |0.2.0 | | | | |OUTRIDER|1.20.0 | |1 |3 | |pandaR |1.34.0 | |2 |2 | |pARI |1.1.1 | | |1 | |PathoStat|1.28.0 | | |1 | |pcaMethods|1.94.0 | | |1 | |PDATK |1.10.0 | |2 |2 | |pecora |0.1.1 | | | | |penppml |0.2.3 | | |2 | |PepsNMR |1.20.0 | | |1 | |phosphonormalizer|1.26.0 | | |1 | |Pigengene|1.28.0 | |1 |2 | |PINSPlus|2.0.6 | | |1 | |pipeComp|1.12.0 | | |5 | |PlackettLuce |0.4.3 | | | | |pmp |1.14.0 | | |1 | |POMaSPU |1.0.0 | | | | |posterior |1.5.0 | | | | |ProteoDisco|1.8.0 | |2 |2 | |ProteoMM|1.20.0 | | |1 | |PSCBS |0.66.0 | | | | |QDNAseq |1.38.0 |1 | | | |Qest |1.0.0 | | |1 | |QFeatures|1.12.0 | |1 |2 | |Qindex |0.1.5 | | | | |RAC |1.5.5 | | | | |RaceID |0.3.3 | | |1 | |rADA |1.1.9 |1 | |2 | |RadioGx |2.6.0 | | |2 | |ramr |1.10.0 | | | | |RandomForestsGLS|0.1.4 | |1 | | |randomGLM |1.10-1 | | | | |randomizationInference |1.0.4 | | | | |RBesT |1.7-2 | | |2 | |RCarb |0.1.6 | | | | |recommenderlab |1.0.6 | | | | |reconsi |1.14.0 | | | | |Rediscover |0.3.2 | | | | |regsem |1.9.5 | | |1 | |reservr |0.0.2 | | |2 | |RGCCA |3.0.2 |1 | | | |rhierbaps |1.1.4 | | | | |RHRT |1.0.1 | | | | |RiboDiPA|1.10.0 | | |1 | |RJcluster|3.2.4 | |1 |2 | |RNAmodR |1.16.0 |1 | |1 | |RNAseqQC|0.1.4 | | |1 | |RnBeads |2.20.0 | | |8 | |robustlm|0.1.0 | | |1 | |Rogue |2.1.5 | | | | |RolDE |1.6.0 | | | | |rpm |0.7-1 | | |1 | |rsvddpd |1.0.0 | | |1 | |RTCC |0.1.1 | | | | |rTLsDeep |0.0.5 | | | | |rtrend |0.1.4 | | |2 | |samr |3.0 | | |1 | |SANvi |0.1.0 | | |1 | |scDataviz|1.12.0 | | |1 | |scDesign3 |1.0.0 | | | | |scDHA |1.2.1 | | |1 | |SCFA |1.12.0 | | | | |scHOT |1.14.0 | | | | |scISR |0.1.1 | | |1 | |scITD |1.0.4 | | | | |scmap |1.24.0 |1 | |3 | |scMET |1.4.0 | | |3 | |scone |1.26.0 | | |1 | |scp |1.12.0 | | |3 | |scPCA |1.16.0 | | |1 | |scPloidy |0.3.0 | | | | |scpoisson |0.0.1 | | | | |sctransform|0.4.1 | | |1 | |seagull |1.1.0 | |1 |2 | |sechm |1.10.0 | | |2 | |seeds |0.9.1 | | | | |sensobol |1.1.4 | | | | |seqArchR|1.6.0 |2 | | | |Seurat |4.4.0 |1 |1 |2 | |SGP |2.1-0.0 | | |1 | |SIAMCAT |2.6.0 | | |3 | |SICtools|1.32.0 | |2 |3 | |sigminer|2.2.2 | | |1 | |signifinder|1.4.0 | | |2 | |SimBu |1.4.0 | | |2 | |simona |1.0.0 | | |2 | |simPop |2.1.2 | | |1 | |sindyr |0.2.3 | | |1 | |Single.mTEC.Transcriptomes|1.30.0 | |1 |1 | |singleCellTK|2.12.0 |1 | |1 | |singscore|1.22.0 | | |1 | |sizeMat |1.1.2 | | | | |SkeweDF |0.1.0 | | |1 | |slasso |1.0.0 | | |2 | |slingshot |2.10.0 | | | | |SPARRAfairness |0.0.0.1 | | | | |sparrow |1.8.0 | | |2 | |SparseArray|1.2.0 |1 | |1 | |sparseMatrixStats|1.14.0 | | |3 | |spathial|0.1.2 | | |2 | |spatzie |1.8.0 | | |1 | |spdesign |0.0.2 | | | | |splatter|1.26.0 | | |1 | |SpliceWiz|1.4.0 | | |2 | |splitFeas |0.1.0 | | | | |SPOTlight|1.6.0 |1 | | | |spqn |1.14.0 | | |1 | |SQI |0.1.0 | | | | |SRTsim |0.99.6 | | | | |stabiliser|1.0.6 | | |1 | |stability |0.5.0 | | | | |stapler |0.7.1 | | |1 | |staRdom |1.1.28 | | | | |statar |0.7.6 | | | | |stm |1.3.6.1 | | |2 | |STROMA4 |1.24.0 |1 | |2 | |StructFDR |1.3 | | | | |subtee |1.0.1 | | | | |summarytools|1.0.1 | |1 |1 | |sumR |0.4.14 | | | | |susieR |0.12.35 | |1 | | |sva |3.50.0 | | |1 | |target |1.16.0 | | | | |TCA |1.2.1 | | |2 | |templateICAr|0.6.2 | | |2 | |tenXplore |1.24.0 | | | | |ThurMod |1.1.11 | | | | |tidybulk|1.13.1 |1 |1 |1 | |TOAST |1.16.0 | | | | |TopDom |0.10.1 | | | | |topGO |2.54.0 | | |4 | |tradeSeq|1.16.0 | | |3 | |TRESS |1.8.0 | | |1 | |ttScreening |1.6 | | | | |tximport |1.30.0 | | | | |UBayFS |1.0 | | | | |UPG |0.3.3 | | | | |utilities |0.6.1 | | | | |VanillaICE|1.64.0 | |1 |3 | |VaSP |1.14.0 | | |1 | |Voyager |1.4.0 |1 |1 |1 | |vsclust |1.4.0 | |1 |4 | |wateRmelon|2.8.0 | |3 |4 | |WaverideR|0.3.2 | |1 | | |weakARMA |1.0.3 | | | | |WeMix |4.0.0 | |1 |1 | |WGCNA |1.72-1 | |1 | | |Wrench |1.20.0 | | | | |yarn |1.28.0 | |1 | | |zinbwave |1.24.0 | | | |

HenrikBengtsson/matrixStats documentation built on April 12, 2024, 5:32 a.m.