parallelly: Enhancing the 'parallel' Package

ACE

Version: 1.12.0
GitHub: https://github.com/tgac-vumc/ACE
Source code: https://github.com/cran/ACE
Date/Publication: 2021-10-26
Number of recursive dependencies: 91

Run revdep_details(, "ACE") for more info

checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘QDNAseq:::sdDiffTrim’ See the note in ?`:::` about the use of this operator.
checking R code for possible problems ... NOTE squaremodel: no visible binding for global variable ‘cellularity’ Undefined global functions or variables: cellularity
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘corrplot’

AIPW

Version: 0.6.3.2
GitHub: https://github.com/yqzhong7/AIPW
Source code: https://github.com/cran/AIPW
Date/Publication: 2021-06-11 09:30:02 UTC
Number of recursive dependencies: 99

Run revdep_details(, "AIPW") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Rsolnp’ ‘SuperLearner’ ‘future.apply’ ‘ggplot2’ ‘progressr’ ‘stats’ ‘utils’ All declared Imports should be used.

AlpsNMR

Version: 3.4.0
GitHub: NA
Source code: https://github.com/cran/AlpsNMR
Date/Publication: 2021-10-26
Number of recursive dependencies: 167

Run revdep_details(, "AlpsNMR") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘zip’ All declared Imports should be used.

aroma.core

Version: 3.2.2
GitHub: https://github.com/HenrikBengtsson/aroma.core
Source code: https://github.com/cran/aroma.core
Date/Publication: 2021-01-05 05:10:12 UTC
Number of recursive dependencies: 48

Run revdep_details(, "aroma.core") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

autohd

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/autohd
Date/Publication: 2021-05-10 08:02:24 UTC
Number of recursive dependencies: 123

Run revdep_details(, "autohd") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Hmisc’ ‘broom’ ‘tibble’ ‘usethis’ All declared Imports should be used.

BAMBI

Version: 2.3.3
GitHub: https://github.com/c7rishi/BAMBI
Source code: https://github.com/cran/BAMBI
Date/Publication: 2021-10-02 13:40:23 UTC
Number of recursive dependencies: 49

Run revdep_details(, "BAMBI") for more info

checking installed package size ... NOTE installed size is 6.3Mb sub-directories of 1Mb or more: libs 5.8Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats4’ All declared Imports should be used.

BatchGetSymbols

Version: 2.6.1
GitHub: NA
Source code: https://github.com/cran/BatchGetSymbols
Date/Publication: 2020-11-28 15:10:21 UTC
Number of recursive dependencies: 89

Run revdep_details(, "BatchGetSymbols") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

bcmaps

Version: 1.0.2
GitHub: https://github.com/bcgov/bcmaps
Source code: https://github.com/cran/bcmaps
Date/Publication: 2021-03-09 23:40:03 UTC
Number of recursive dependencies: 129

Run revdep_details(, "bcmaps") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

BEKKs

Version: 1.1.0
GitHub: NA
Source code: https://github.com/cran/BEKKs
Date/Publication: 2022-03-19 00:20:02 UTC
Number of recursive dependencies: 81

Run revdep_details(, "BEKKs") for more info

checking installed package size ... NOTE installed size is 14.7Mb sub-directories of 1Mb or more: libs 13.9Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘expm’ ‘forecast’ ‘parallel’ All declared Imports should be used.

bigDM

Version: 0.4.1
GitHub: https://github.com/spatialstatisticsupna/bigDM
Source code: https://github.com/cran/bigDM
Date/Publication: 2022-02-08 15:40:10 UTC
Number of recursive dependencies: 125

Run revdep_details(, "bigDM") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘INLA’
checking data for non-ASCII characters ... NOTE Note: found 940 marked Latin-1 strings

bigsnpr

Version: 1.9.11
GitHub: https://github.com/privefl/bigsnpr
Source code: https://github.com/cran/bigsnpr
Date/Publication: 2022-02-16 17:50:05 UTC
Number of recursive dependencies: 141

Run revdep_details(, "bigsnpr") for more info

checking installed package size ... NOTE installed size is 14.2Mb sub-directories of 1Mb or more: libs 12.9Mb

bigstatsr

Version: 1.5.6
GitHub: https://github.com/privefl/bigstatsr
Source code: https://github.com/cran/bigstatsr
Date/Publication: 2022-02-03 16:30:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "bigstatsr") for more info

checking installed package size ... NOTE installed size is 17.1Mb sub-directories of 1Mb or more: extdata 2.3Mb libs 14.1Mb

biscuiteer

Version: 1.8.0
GitHub: https://github.com/trichelab/biscuiteer
Source code: https://github.com/cran/biscuiteer
Date/Publication: 2021-10-26
Number of recursive dependencies: 217

Run revdep_details(, "biscuiteer") for more info

checking whether package ‘biscuiteer’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘BiocParallel::bpstart’ by ‘QDNAseq::bpstart’ when loading ‘biscuiteer’ See ‘/c4/home/henrik/repositories/parallelly/revdep/checks/biscuiteer/new/biscuiteer.Rcheck/00install.out’ for details.
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: ... --- re-building ‘biscuiteer.Rmd’ using rmarkdown Error: processing vignette 'biscuiteer.Rmd' failed with diagnostics: there is no package called ‘BiocStyle’ --- failed re-building ‘biscuiteer.Rmd’

SUMMARY: processing the following file failed: ‘biscuiteer.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking installed package size ... NOTE installed size is 5.8Mb sub-directories of 1Mb or more: data 1.1Mb extdata 3.4Mb
checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘QDNAseq:::expectedVariance’ See the note in ?`:::` about the use of this operator.

bistablehistory

Version: 1.1.1
GitHub: https://github.com/alexander-pastukhov/bistablehistory
Source code: https://github.com/cran/bistablehistory
Date/Publication: 2022-03-22 13:40:02 UTC
Number of recursive dependencies: 89

Run revdep_details(, "bistablehistory") for more info

checking installed package size ... NOTE installed size is 43.3Mb sub-directories of 1Mb or more: libs 42.4Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RcppParallel’ ‘magrittr’ All declared Imports should be used.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blavaan

Version: 0.4-1
GitHub: NA
Source code: https://github.com/cran/blavaan
Date/Publication: 2022-01-27 21:40:02 UTC
Number of recursive dependencies: 104

Run revdep_details(, "blavaan") for more info

checking installed package size ... NOTE installed size is 71.5Mb sub-directories of 1Mb or more: libs 68.9Mb testdata 1.5Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blockCV

Version: 2.1.4
GitHub: https://github.com/rvalavi/blockCV
Source code: https://github.com/cran/blockCV
Date/Publication: 2021-06-17 04:50:02 UTC
Number of recursive dependencies: 119

Run revdep_details(, "blockCV") for more info

checking installed package size ... NOTE installed size is 8.6Mb sub-directories of 1Mb or more: extdata 7.7Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘biomod2’

bootUR

Version: 0.4.2
GitHub: https://github.com/smeekes/bootUR
Source code: https://github.com/cran/bootUR
Date/Publication: 2021-11-25 11:00:02 UTC
Number of recursive dependencies: 68

Run revdep_details(, "bootUR") for more info

checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: libs 5.1Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

brms

Version: 2.16.3
GitHub: https://github.com/paul-buerkner/brms
Source code: https://github.com/cran/brms
Date/Publication: 2021-11-22 19:50:02 UTC
Number of recursive dependencies: 177

Run revdep_details(, "brms") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'get_refmodel.brmsfit.Rd': ‘[projpred:get-refmodel]{get_refmodel}’ ‘[projpred:get-refmodel]{init_refmodel}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: R 4.1Mb doc 2.4Mb

cfbfastR

Version: 1.6.4
GitHub: https://github.com/saiemgilani/cfbfastR
Source code: https://github.com/cran/cfbfastR
Date/Publication: 2021-10-27 12:30:02 UTC
Number of recursive dependencies: 110

Run revdep_details(, "cfbfastR") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘xgboost’ All declared Imports should be used.

ChromSCape

Version: 1.4.0
GitHub: https://github.com/vallotlab/ChromSCape
Source code: https://github.com/cran/ChromSCape
Date/Publication: 2021-10-26
Number of recursive dependencies: 272

Run revdep_details(, "ChromSCape") for more info

checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
checking installed package size ... NOTE installed size is 7.9Mb sub-directories of 1Mb or more: data 1.3Mb doc 2.9Mb www 2.0Mb
checking R code for possible problems ... NOTE CompareWilcox: no visible binding for global variable ‘annot.’ bams_to_matrix_indexes: no visible binding for global variable ‘files_dir_list’ filter_correlated_cell_scExp: no visible binding for global variable ‘run_tsne’ generate_analysis: no visible binding for global variable ‘k’ generate_analysis: no visible binding for global variable ‘clusterConsensus’ get_most_variable_cyto: no visible binding for global variable ‘cytoBand’ ... plot_reduced_dim_scExp: no visible binding for global variable ‘V1’ plot_reduced_dim_scExp: no visible binding for global variable ‘V2’ plot_reduced_dim_scExp: no visible binding for global variable ‘cluster’ subset_bam_call_peaks: no visible binding for global variable ‘merged_bam’ Undefined global functions or variables: Fri_cyto Gain_or_Loss V1 V2 absolute_value annot. cluster clusterConsensus cytoBand files_dir_list genes k merged_bam ncells run_tsne sample_id total_counts
checking Rd files ... NOTE prepare_Rd: raw_counts_to_sparse_matrix.Rd:6-8: Dropping empty section \source
checking files in ‘vignettes’ ... NOTE Files named as vignettes but with no recognized vignette engine: ‘vignettes/PairedTag_Zhu_H3K4me1.Rmd’ ‘vignettes/scChIC_Ku_H3K4me3.Rmd’ (Is a VignetteBuilder field missing?)

civis

Version: 3.0.0
GitHub: https://github.com/civisanalytics/civis-r
Source code: https://github.com/cran/civis
Date/Publication: 2020-06-22 18:00:02 UTC
Number of recursive dependencies: 88

Run revdep_details(, "civis") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

Clustering

Version: 1.7.5
GitHub: https://github.com/laperez/clustering
Source code: https://github.com/cran/Clustering
Date/Publication: 2021-12-14 13:50:05 UTC
Number of recursive dependencies: 157

Run revdep_details(, "Clustering") for more info

checking examples ... ERROR ``` Running examples in ‘Clustering-Ex.R’ failed The error most likely occurred in:

Name: best_ranked_external_metrics

Title: Best rated external metrics.

Aliases: best_ranked_external_metrics

** Examples

... + df = cluster::agriculture, + min = 4, + max = 4, + algorithm='gmm', + metrics=c("Recall") + ) Error in makePSOCKcluster(names = spec, ...) : numeric 'names' must be >= 1 Calls: clustering ... execute_package_parallel -> -> makePSOCKcluster Execution halted ```

codebook

Version: 0.9.2
GitHub: https://github.com/rubenarslan/codebook
Source code: https://github.com/cran/codebook
Date/Publication: 2020-06-06 23:40:03 UTC
Number of recursive dependencies: 154

Run revdep_details(, "codebook") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘userfriendlyscience’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘graphics’ ‘jsonlite’ ‘rlang’ ‘tidyselect’ ‘vctrs’ All declared Imports should be used.
checking data for non-ASCII characters ... NOTE Note: found 65 marked UTF-8 strings

condvis2

Version: 0.1.1
GitHub: https://github.com/cbhurley/condvis2
Source code: https://github.com/cran/condvis2
Date/Publication: 2020-09-25 09:20:09 UTC
Number of recursive dependencies: 179

Run revdep_details(, "condvis2") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

cSEM

Version: 0.4.0
GitHub: https://github.com/M-E-Rademaker/cSEM
Source code: https://github.com/cran/cSEM
Date/Publication: 2021-04-19 22:00:18 UTC
Number of recursive dependencies: 122

Run revdep_details(, "cSEM") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rdpack’ All declared Imports should be used.

CSGo

Version: 0.6.7
GitHub: https://github.com/adsoncostanzifilho/CSGo
Source code: https://github.com/cran/CSGo
Date/Publication: 2021-05-07 18:50:02 UTC
Number of recursive dependencies: 74

Run revdep_details(, "CSGo") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘extrafont’ ‘future’ All declared Imports should be used.

datapackage.r

Version: 1.3.5
GitHub: https://github.com/frictionlessdata/datapackage-r
Source code: https://github.com/cran/datapackage.r
Date/Publication: 2022-01-11 10:22:47 UTC
Number of recursive dependencies: 118

Run revdep_details(, "datapackage.r") for more info

checking tests ... `` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: ── Failure (test-profile.R:106:5): profile tabular-data-package should be up-to-date ── profile$jsonschema not equal toresponse.data`. Component "properties": Component "licenses": Component "items": Names: 2 string mismatches Component "properties": Component "licenses": Component "items": Length mismatch: comparison on first 5 components Component "properties": Component "licenses": Component "items": Component 4: names for target but not for current Component "properties": Component "licenses": Component "items": Component 4: Length mismatch: comparison on first 2 components ... Component "properties": Component "schema": Component "properties": Component "fields": Component "items": Component "anyOf": Component 1: Component 5: Component 4: Component 1: 1 string mismatch Component "properties": Component "schema": Component "properties": Component "fields": Component "items": Component "anyOf": Component 1: Component 5: Component 4: Component 2: Modes: list, character Component "properties": Component "schema": Component "properties": Component "fields": Component "items": Component "anyOf": Component 1: Component 5: Component 4: Component 2: Component 1: 1 string mismatch Component "properties": Component "schema": Component "properties": Component "fields": Component "items": Component "anyOf": Component 1: Component 5: Component 5: Names: 1 string mismatch Component "properties": Component "schema": Component "properties": Component "fields": Component "items": Component "anyOf": Component 1: Component 5: Component 5: Length mismatch: comparison on first 2 components ...

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 248 ] Error: Test failures Execution halted ```
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘iterators’ ‘readr’ All declared Imports should be used.

delayed

Version: 0.3.0
GitHub: https://github.com/tlverse/delayed
Source code: https://github.com/cran/delayed
Date/Publication: 2020-02-28 11:40:02 UTC
Number of recursive dependencies: 78

Run revdep_details(, "delayed") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘assertthat’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

dipsaus

Version: 0.2.0
GitHub: https://github.com/dipterix/dipsaus
Source code: https://github.com/cran/dipsaus
Date/Publication: 2022-01-27 17:30:02 UTC
Number of recursive dependencies: 76

Run revdep_details(, "dipsaus") for more info

checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 1.3Mb libs 3.5Mb

dispositionEffect

Version: 1.0.0
GitHub: https://github.com/marcozanotti/dispositionEffect
Source code: https://github.com/cran/dispositionEffect
Date/Publication: 2021-08-02 07:50:02 UTC
Number of recursive dependencies: 120

Run revdep_details(, "dispositionEffect") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: ── Failure (test-realized_duration.R:113:2): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). 1/4 mismatches [2] 34 - 28 == 6 ── Failure (test-realized_duration.R:116:2): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). ... 1/4 mismatches [2] 34 - 28 == 6 ── Failure (test-realized_duration.R:161:2): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). 1/4 mismatches [1] 34 - 28 == 6

[ FAIL 36 | WARN 0 | SKIP 0 | PASS 331 ] Error: Test failures Execution halted ```

dragon

Version: 1.2.1
GitHub: https://github.com/sjspielman/dragon
Source code: https://github.com/cran/dragon
Date/Publication: 2022-04-08 08:42:33 UTC
Number of recursive dependencies: 135

Run revdep_details(, "dragon") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘htmltools’ All declared Imports should be used.

easyalluvial

Version: 0.3.0
GitHub: https://github.com/erblast/easyalluvial
Source code: https://github.com/cran/easyalluvial
Date/Publication: 2021-01-13 10:40:09 UTC
Number of recursive dependencies: 146

Run revdep_details(, "easyalluvial") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

EFAtools

Version: 0.4.0
GitHub: https://github.com/mdsteiner/EFAtools
Source code: https://github.com/cran/EFAtools
Date/Publication: 2022-03-21 08:10:07 UTC
Number of recursive dependencies: 90

Run revdep_details(, "EFAtools") for more info

checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: libs 5.5Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

envi

Version: 0.1.13
GitHub: https://github.com/Waller-SUSAN/envi
Source code: https://github.com/cran/envi
Date/Publication: 2022-03-24 08:40:17 UTC
Number of recursive dependencies: 124

Run revdep_details(, "envi") for more info

checking whether package ‘envi’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/parallelly/revdep/checks/envi/new/envi.Rcheck/00install.out’ for details.

EpiNow2

Version: 1.3.2
GitHub: https://github.com/epiforecasts/EpiNow2
Source code: https://github.com/cran/EpiNow2
Date/Publication: 2020-12-14 09:00:15 UTC
Number of recursive dependencies: 157

Run revdep_details(, "EpiNow2") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘EpiSoon’
checking installed package size ... NOTE installed size is 168.1Mb sub-directories of 1Mb or more: libs 166.5Mb

epitweetr

Version: 2.0.3
GitHub: https://github.com/EU-ECDC/epitweetr
Source code: https://github.com/cran/epitweetr
Date/Publication: 2022-01-05 10:00:08 UTC
Number of recursive dependencies: 143

Run revdep_details(, "epitweetr") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘taskscheduleR’
checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: doc 3.0Mb java 1.3Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘httpuv’ ‘knitr’ ‘plyr’ ‘tidyverse’ ‘tokenizers’ ‘xml2’ All declared Imports should be used.

fipe

Version: 0.0.1
GitHub: https://github.com/italocegatta/fipe
Source code: https://github.com/cran/fipe
Date/Publication: 2019-08-25 07:20:06 UTC
Number of recursive dependencies: 66

Run revdep_details(, "fipe") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

flowGraph

Version: 1.2.0
GitHub: https://github.com/aya49/flowGraph
Source code: https://github.com/cran/flowGraph
Date/Publication: 2021-10-26
Number of recursive dependencies: 87

Run revdep_details(, "flowGraph") for more info

checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘flowGraph.Rmd’ using rmarkdown
- 8 pops @ layer 1 23:24:14-23:24:14 > 16:00:00
- 24 pops @ layer 2 23:24:14-23:24:14 > 16:00:00
- 32 pops @ layer 3 23:24:14-23:24:14 > 16:00:00
- 16 pops @ layer 4 23:24:14-23:24:14 > 16:00:00 ... Quitting from lines 557-561 (flowGraph.Rmd) Error: processing vignette 'flowGraph.Rmd' failed with diagnostics: map_df() requires dplyr --- failed re-building ‘flowGraph.Rmd’
SUMMARY: processing the following file failed: ‘flowGraph.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking R code for possible problems ... NOTE get_child: no visible binding for global variable ‘no_cores’ get_paren: no visible binding for global variable ‘no_cores’ ms_psig: no visible binding for global variable ‘meta’ Undefined global functions or variables: meta no_cores
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘doParallel’

foieGras

Version: 0.7-6
GitHub: https://github.com/ianjonsen/foieGras
Source code: https://github.com/cran/foieGras
Date/Publication: 2021-04-26 22:10:07 UTC
Number of recursive dependencies: 139

Run revdep_details(, "foieGras") for more info

checking installed package size ... NOTE installed size is 40.9Mb sub-directories of 1Mb or more: libs 40.0Mb

forecastML

Version: 0.9.0
GitHub: https://github.com/nredell/forecastML
Source code: https://github.com/cran/forecastML
Date/Publication: 2020-05-07 15:10:17 UTC
Number of recursive dependencies: 100

Run revdep_details(, "forecastML") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dtplyr’ All declared Imports should be used.

future

Version: 1.24.0
GitHub: https://github.com/HenrikBengtsson/future
Source code: https://github.com/cran/future
Date/Publication: 2022-02-19 18:20:02 UTC
Number of recursive dependencies: 14

Run revdep_details(, "future") for more info

checking tests ... Running ‘000.sessionDetails.R’ Running ‘ClusterRegistry.R’ Running ‘Future-class.R’ Running ‘FutureError.R’ Running ‘FutureGlobals.R’ Running ‘FutureRegistry.R’ Running ‘adhoc_native_to_utf8.R’ Running ‘backtrace.R’ Running ‘bquote.R’ Running ‘cluster,worker-termination.R’ ... > r <- resolved(f) > stopifnot(r) > v <- tryCatch(value(f), error = identity) > stopifnot(inherits(v, "error")) > > plan(multisession, earlySignal = TRUE) > f <- future({ stop("bang!") }) Error in eval(quote({ : bang! Calls: future ... run.UniprocessFuture -> signalEarly -> signalConditions Execution halted

GeneBreak

Version: 1.24.0
GitHub: https://github.com/stefvanlieshout/GeneBreak
Source code: https://github.com/cran/GeneBreak
Date/Publication: 2021-10-26
Number of recursive dependencies: 41

Run revdep_details(, "GeneBreak") for more info

checking R code for possible problems ... NOTE .glmbreak: no visible global function definition for ‘glm’ .glmbreak: no visible global function definition for ‘predict’ addGeneAnnotation,CopyNumberBreakPoints: no visible global function definition for ‘head’ bpStats,CopyNumberBreakPoints: no visible global function definition for ‘sd’ bpStats,CopyNumberBreakPoints: no visible global function definition for ‘p.adjust’ Undefined global functions or variables: glm head p.adjust predict sd Consider adding importFrom("stats", "glm", "p.adjust", "predict", "sd") importFrom("utils", "head") to your NAMESPACE file.

geocmeans

Version: 0.2.0
GitHub: https://github.com/JeremyGelb/geocmeans
Source code: https://github.com/cran/geocmeans
Date/Publication: 2021-08-23 07:11:35 UTC
Number of recursive dependencies: 204

Run revdep_details(, "geocmeans") for more info

checking installed package size ... NOTE installed size is 11.4Mb sub-directories of 1Mb or more: data 2.3Mb doc 1.9Mb libs 6.1Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘rgdal’ All declared Imports should be used.

GetBCBData

Version: 0.6
GitHub: https://github.com/msperlin/GetBCBData
Source code: https://github.com/cran/GetBCBData
Date/Publication: 2021-01-21 17:40:07 UTC
Number of recursive dependencies: 88

Run revdep_details(, "GetBCBData") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RCurl’ ‘lubridate’ ‘readr’ ‘stats’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

googleComputeEngineR

Version: 0.3.0
GitHub: https://github.com/cloudyr/googleComputeEngineR
Source code: https://github.com/cran/googleComputeEngineR
Date/Publication: 2019-05-04 22:40:02 UTC
Number of recursive dependencies: 68

Run revdep_details(, "googleComputeEngineR") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

googleTagManageR

Version: 0.1.6
GitHub: NA
Source code: https://github.com/cran/googleTagManageR
Date/Publication: 2020-10-05 13:20:10 UTC
Number of recursive dependencies: 70

Run revdep_details(, "googleTagManageR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘assertthat’ ‘future’ ‘httr’ ‘jsonlite’ All declared Imports should be used.

grattan

Version: 1.9.0.10
GitHub: https://github.com/HughParsonage/grattan
Source code: https://github.com/cran/grattan
Date/Publication: 2022-01-10 01:02:41 UTC
Number of recursive dependencies: 121

Run revdep_details(, "grattan") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'taxstats', 'taxstats1516'
checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: libs 4.1Mb

greed

Version: 0.6.0
GitHub: https://github.com/comeetie/greed
Source code: https://github.com/cran/greed
Date/Publication: 2022-03-18 12:50:02 UTC
Number of recursive dependencies: 93

Run revdep_details(, "greed") for more info

checking installed package size ... NOTE installed size is 28.3Mb sub-directories of 1Mb or more: libs 26.0Mb
checking data for non-ASCII characters ... NOTE Note: found 989 marked UTF-8 strings

GREENeR

Version: 0.1.0
GitHub: https://github.com/calfarog/GREENeR
Source code: https://github.com/cran/GREENeR
Date/Publication: 2022-01-27 19:40:12 UTC
Number of recursive dependencies: 129

Run revdep_details(, "GREENeR") for more info

checking examples ... ERROR ``` Running examples in ‘GREENeR-Ex.R’ failed The error most likely occurred in:

Name: input_plot

Title: Plot input load by source

Aliases: input_plot

** Examples

the data of the TN scenario

... data(annual_data_TN) data(sh_file)

The name of the basin

basin_name <- "Lay"

the barplot

input_plot(annual_data_TN, sh_file, basin_name, "B") OGR: Corrupt data Error in CPL_crs_parameters(x) : OGR error Calls: input_plot ... st_is_longlat -> crs_parameters -> CPL_crs_parameters Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘GREENeR.Rmd’ using rmarkdown code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ... Quitting from lines 140-143 (GREENeR.Rmd) Error: processing vignette 'GREENeR.Rmd' failed with diagnostics: OGR error --- failed re-building ‘GREENeR.Rmd’

SUMMARY: processing the following file failed: ‘GREENeR.Rmd’

Error: Vignette re-building failed. Execution halted ```

greta

Version: 0.4.2
GitHub: https://github.com/greta-dev/greta
Source code: https://github.com/cran/greta
Date/Publication: 2022-03-22 13:00:02 UTC
Number of recursive dependencies: 167

Run revdep_details(, "greta") for more info

checking tests ... ``` Running ‘spelling.R’ Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: x Initialising python and checking dependencies, this may take a moment. ... ...

i Initialising python and checking dependencies, this may take a moment. x Initialising python and checking dependencies, this may take a moment. ... ...

... 4. │ ├─testthat .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─greta:::check_future_plan()

[ FAIL 1 | WARN 0 | SKIP 251 | PASS 4 ] Deleting unused snapshots: • greta-sitrep.md Error: Test failures Execution halted ```

gWQS

Version: 3.0.4
GitHub: NA
Source code: https://github.com/cran/gWQS
Date/Publication: 2021-05-20 09:30:02 UTC
Number of recursive dependencies: 102

Run revdep_details(, "gWQS") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.

hackeRnews

Version: 0.1.0
GitHub: https://github.com/szymanskir/hackeRnews
Source code: https://github.com/cran/hackeRnews
Date/Publication: 2019-12-13 13:20:05 UTC
Number of recursive dependencies: 68

Run revdep_details(, "hackeRnews") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

hal9001

Version: 0.4.3
GitHub: https://github.com/tlverse/hal9001
Source code: https://github.com/cran/hal9001
Date/Publication: 2022-02-09 22:50:02 UTC
Number of recursive dependencies: 96

Run revdep_details(, "hal9001") for more info

checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 5.7Mb

HiCcompare

Version: 1.16.0
GitHub: https://github.com/dozmorovlab/HiCcompare
Source code: https://github.com/cran/HiCcompare
Date/Publication: 2021-10-26
Number of recursive dependencies: 125

Run revdep_details(, "HiCcompare") for more info

checking LazyData ... WARNING LazyData DB of 5.6 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions'
checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: data 5.6Mb
checking R code for possible problems ... NOTE .adjust_pval : <anonymous>: no visible binding for global variable ‘p.adj’ .adjust_pval : <anonymous>: no visible binding for global variable ‘p.value’ .adjust_pval: no visible binding for global variable ‘p.value’ .adjust_pval: no visible binding for global variable ‘p.adj’ .calc.diff.thresh: no visible global function definition for ‘sd’ .calc.pval: no visible binding for global variable ‘D’ .calc.pval: no visible binding for global variable ‘p.value’ .calc.pval: no visible binding for global variable ‘p.adj’ ... volcano: no visible binding for global variable ‘D’ Undefined global functions or variables: A D IF IF1 IF2 M Z adj.IF1 adj.IF2 adj.M axis bias.slope bp centromere_locations chr1 chr2 count fold.change head i j na.omit p.adj p.value pnorm region1 region2 sd start1 start2 Consider adding importFrom("graphics", "axis") importFrom("stats", "D", "na.omit", "pnorm", "sd") importFrom("utils", "head") to your NAMESPACE file.

hwep

Version: 0.0.1
GitHub: NA
Source code: https://github.com/cran/hwep
Date/Publication: 2021-09-28 10:30:02 UTC
Number of recursive dependencies: 69

Run revdep_details(, "hwep") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

iml

Version: 0.10.1
GitHub: https://github.com/christophM/iml
Source code: https://github.com/cran/iml
Date/Publication: 2020-09-24 12:30:14 UTC
Number of recursive dependencies: 168

Run revdep_details(, "iml") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘keras’ All declared Imports should be used.

infercnv

Version: 1.10.1
GitHub: https://github.com/broadinstitute/inferCNV
Source code: https://github.com/cran/infercnv
Date/Publication: 2021-11-08
Number of recursive dependencies: 135

Run revdep_details(, "infercnv") for more info

checking installed package size ... NOTE installed size is 5.0Mb sub-directories of 1Mb or more: extdata 3.1Mb
checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘HiddenMarkov:::makedensity’ See the note in ?`:::` about the use of this operator.

inlinedocs

Version: 2019.12.5
GitHub: https://github.com/tdhock/inlinedocs
Source code: https://github.com/cran/inlinedocs
Date/Publication: 2019-12-05 23:30:07 UTC
Number of recursive dependencies: 7

Run revdep_details(, "inlinedocs") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘R.methodsS3’

ipc

Version: 0.1.3
GitHub: https://github.com/fellstat/ipc
Source code: https://github.com/cran/ipc
Date/Publication: 2019-06-23 06:00:03 UTC
Number of recursive dependencies: 69

Run revdep_details(, "ipc") for more info

checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: ... --- re-building ‘shinymp.Rmd’ using rmarkdown Quitting from lines 253-275 (shinymp.Rmd) Error: processing vignette 'shinymp.Rmd' failed with diagnostics: argument 1 (type 'list') cannot be handled by 'cat' --- failed re-building ‘shinymp.Rmd’

SUMMARY: processing the following file failed: ‘shinymp.Rmd’

Error: Vignette re-building failed. Execution halted ```

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

ivmte

Version: 1.4.0
GitHub: NA
Source code: https://github.com/cran/ivmte
Date/Publication: 2021-09-17 12:20:07 UTC
Number of recursive dependencies: 111

Run revdep_details(, "ivmte") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'gurobi', 'cplexAPI'

kernelboot

Version: 0.1.7
GitHub: https://github.com/twolodzko/kernelboot
Source code: https://github.com/cran/kernelboot
Date/Publication: 2020-02-13 23:10:03 UTC
Number of recursive dependencies: 64

Run revdep_details(, "kernelboot") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

keyATM

Version: 0.4.0
GitHub: https://github.com/keyATM/keyATM
Source code: https://github.com/cran/keyATM
Date/Publication: 2021-02-14 17:40:02 UTC
Number of recursive dependencies: 107

Run revdep_details(, "keyATM") for more info

checking installed package size ... NOTE installed size is 18.9Mb sub-directories of 1Mb or more: libs 18.5Mb

lava

Version: 1.6.10
GitHub: https://github.com/kkholst/lava
Source code: https://github.com/cran/lava
Date/Publication: 2021-09-02 14:50:18 UTC
Number of recursive dependencies: 131

Run revdep_details(, "lava") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'gof', 'lava.tobit'

lidR

Version: 4.0.0
GitHub: https://github.com/r-lidar/lidR
Source code: https://github.com/cran/lidR
Date/Publication: 2022-02-18 16:10:03 UTC
Number of recursive dependencies: 158

Run revdep_details(, "lidR") for more info

checking examples ... ERROR ``` Running examples in ‘lidR-Ex.R’ failed The error most likely occurred in:

Name: its_dalponte2016

Title: Individual Tree Segmentation Algorithm

Aliases: its_dalponte2016 dalponte2016

** Examples

LASfile <- system.file("extdata", "MixedConifer.laz", package="lidR") ... chm <- rasterize_canopy(las, 0.5, p2r(0.3), pkg = "raster") ker <- matrix(1,3,3) chm <- raster::focal(chm, w = ker, fun = mean, na.rm = TRUE)

ttops <- locate_trees(chm, lmf(4, 2)) las <- segment_trees(las, dalponte2016(chm, ttops)) Error in geos_op2_geom("intersection", x, y, ...) : st_crs(x) == st_crs(y) is not TRUE Calls: segment_trees ... st_intersection.sf -> geos_op2_df -> geos_op2_geom -> stopifnot Execution halted ```
checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output:
1. └─lidR algorithm(st_bbox(las))
2. └─lidR:::crop_special_its(treetops, chm, bbox)
3. └─lidR:::raster_crop(chm, bbox)
4. ├─sf::st_crop(raster, bbox)
5. └─stars:::st_crop.stars(raster, bbox) ── Error (test-segment_trees.R:147:3): Silva algorithm works with sfc ────────── ...
  1. └─lidR:::segment_trees.LAS(las, silva2016(chm, ttops_shifted500))
  2. └─lidR algorithm(st_bbox(las))
  3. └─lidR:::crop_special_its(treetops, chm, bbox)
6. └─lidR:::raster_crop(chm, bbox)
7. ├─sf::st_crop(raster, bbox)
8. └─stars:::st_crop.stars(raster, bbox)
[ FAIL 20 | WARN 5 | SKIP 40 | PASS 1345 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 15.8Mb sub-directories of 1Mb or more: R 1.1Mb doc 1.0Mb extdata 1.1Mb libs 12.0Mb

lmtp

Version: 1.0.0
GitHub: https://github.com/nt-williams/lmtp
Source code: https://github.com/cran/lmtp
Date/Publication: 2021-09-29 07:10:07 UTC
Number of recursive dependencies: 113

Run revdep_details(, "lmtp") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘nnls’ ‘utils’ All declared Imports should be used.

LWFBrook90R

Version: 0.4.5
GitHub: https://github.com/pschmidtwalter/LWFBrook90R
Source code: https://github.com/cran/LWFBrook90R
Date/Publication: 2021-11-30 15:50:02 UTC
Number of recursive dependencies: 71

Run revdep_details(, "LWFBrook90R") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(LWFBrook90R) > > test_check("LWFBrook90R") [ FAIL 2 | WARN 0 | SKIP 1 | PASS 29 ]

... Backtrace: ▆ 1. ├─testthat::expect_type(...) at test-msiterunLWFB90.R:40:2 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─LWFBrook90R::run_multisite_LWFB90(...)

[ FAIL 2 | WARN 0 | SKIP 1 | PASS 29 ] Error: Test failures Execution halted ```

MAI

Version: 1.0.0
GitHub: https://github.com/KechrisLab/MAI
Source code: https://github.com/cran/MAI
Date/Publication: 2021-10-26
Number of recursive dependencies: 162

Run revdep_details(, "MAI") for more info

checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file.

mappp

Version: 1.0.0
GitHub: https://github.com/cole-brokamp/mappp
Source code: https://github.com/cran/mappp
Date/Publication: 2022-01-25 09:22:42 UTC
Number of recursive dependencies: 40

Run revdep_details(, "mappp") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘pbmcapply’ All declared Imports should be used.

microservices

Version: 0.1.2
GitHub: https://github.com/tidylab/microservices
Source code: https://github.com/cran/microservices
Date/Publication: 2021-06-12 06:10:02 UTC
Number of recursive dependencies: 69

Run revdep_details(, "microservices") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(microservices) > test_check("microservices") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 12 ]

══ Failed tests ════════════════════════════════════════════════════════════════ ... Backtrace: ▆ 1. ├─config::get(...) at test-endpoint-plumber-{route_name}.R:2:0 2. │ └─base::normalizePath(file, mustWork = FALSE) 3. │ └─base::path.expand(path) 4. └─base::system.file(...)

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 12 ] Error: Test failures Execution halted ```
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘config’ ‘desc’ ‘dplyr’ ‘glue’ ‘withr’ All declared Imports should be used.

MineICA

Version: 1.34.0
GitHub: NA
Source code: https://github.com/cran/MineICA
Date/Publication: 2021-10-26
Number of recursive dependencies: 208

Run revdep_details(, "MineICA") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'Alist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'Slist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'class-IcaSet.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'getComp.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'runAn.Rd': ‘[Category:class-GOHyperGParams]{GOHyperGParams}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking for missing documentation entries ... WARNING Undocumented S4 classes: ‘MineICAParams’ All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking package dependencies ... NOTE ``` Package which this enhances but not available for checking: ‘doMC’

Depends: includes the non-default packages: 'BiocGenerics', 'Biobase', 'plyr', 'ggplot2', 'scales', 'foreach', 'xtable', 'biomaRt', 'gtools', 'GOstats', 'cluster', 'marray', 'mclust', 'RColorBrewer', 'colorspace', 'igraph', 'Rgraphviz', 'graph', 'annotate', 'Hmisc', 'fastICA', 'JADE' Adding so many packages to the search path is excessive and importing selectively is preferable. ```
checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘biomaRt’ ‘GOstats’ ‘cluster’ ‘mclust’ ‘igraph’ A package should be listed in only one of these fields.
checking dependencies in R code ... NOTE 'library' or 'require' call to ‘GOstats’ which was already attached by Depends. Please remove these calls from your code. Namespace in Imports field not imported from: ‘lumiHumanAll.db’ All declared Imports should be used. Packages in Depends field not imported from: ‘GOstats’ ‘Hmisc’ ‘JADE’ ‘RColorBrewer’ ‘Rgraphviz’ ‘annotate’ ‘biomaRt’ ‘cluster’ ‘colorspace’ ‘fastICA’ ‘foreach’ ‘ggplot2’ ‘graph’ ‘gtools’ ‘igraph’ ‘marray’ ‘mclust’ ‘methods’ ‘plyr’ ‘scales’ ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. ':::' calls which should be '::': ‘Biobase:::annotation<-’ ‘Biobase:::validMsg’ ‘fpc:::pamk’ ‘lumi:::getChipInfo’ ‘mclust:::adjustedRandIndex’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘Biobase:::isValidVersion’ See the note in ?`:::` about the use of this operator.
checking R code for possible problems ... NOTE addGenesToGoReport: no visible global function definition for ‘geneIdsByCategory’ addGenesToGoReport: no visible global function definition for ‘geneIdUniverse’ addGenesToGoReport: no visible global function definition for ‘conditional’ addGenesToGoReport: no visible global function definition for ‘sigCategories’ annot2Color: no visible global function definition for ‘brewer.pal’ annot2Color: no visible global function definition for ‘heat_hcl’ ... importFrom("methods", "callNextMethod", "new", "validObject") importFrom("stats", "aggregate", "as.dendrogram", "as.dist", "as.hclust", "chisq.test", "cor", "cor.test", "cutree", "dist", "hclust", "kmeans", "kruskal.test", "lm", "median", "na.omit", "order.dendrogram", "p.adjust", "quantile", "reorder", "shapiro.test", "wilcox.test") importFrom("utils", "capture.output", "combn", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').
checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘MineICA.Rnw’ using Sweave Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:
```
IQR, mad, sd, var, xtabs
```
... l.23 \usepackage {subfig}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘MineICA.Rnw’

SUMMARY: processing the following file failed: ‘MineICA.Rnw’

Error: Vignette re-building failed. Execution halted ```

missSBM

Version: 1.0.2
GitHub: https://github.com/grossSBM/missSBM
Source code: https://github.com/cran/missSBM
Date/Publication: 2022-02-01 16:00:20 UTC
Number of recursive dependencies: 108

Run revdep_details(, "missSBM") for more info

checking installed package size ... NOTE installed size is 8.4Mb sub-directories of 1Mb or more: libs 6.5Mb

mlr3proba

Version: 0.4.4
GitHub: https://github.com/mlr-org/mlr3proba
Source code: https://github.com/cran/mlr3proba
Date/Publication: 2022-02-16 10:20:18 UTC
Number of recursive dependencies: 138

Run revdep_details(, "mlr3proba") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output:
1. │ └─mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
2. │ └─op[fun]
3. │ └─mlr3pipelines:::.PipeOppredict(...)
4. │ ├─base::withCallingHandlers(...)
5. │ └─private$.predict(input)
6. │ └─mlr3proba:::.PipeOpCrankCompositor.predict(...) ...
7. │ └─base::eval(expr, p)
8. └─PredictionSurv$new(...)
9. └─mlr3proba initialize(...)
10. └─mlr3proba:::.PredictionSurvinitialize(...)
11. └─private$.simplify_distr(distr)
12. └─mlr3proba:::.PredictionSurv.simplify_distr(...)
[ FAIL 23 | WARN 17 | SKIP 2 | PASS 1725 ] Error: Test failures Execution halted ```

mlr3shiny

Version: 0.2.0
GitHub: NA
Source code: https://github.com/cran/mlr3shiny
Date/Publication: 2021-09-30 13:40:02 UTC
Number of recursive dependencies: 134

Run revdep_details(, "mlr3shiny") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘DT’ ‘data.table’ ‘e1071’ ‘mlr3’ ‘mlr3learners’ ‘mlr3measures’ ‘plyr’ ‘purrr’ ‘ranger’ ‘readxl’ ‘shinyWidgets’ ‘shinyalert’ ‘shinydashboard’ ‘shinyjs’ ‘shinythemes’ ‘stats’ ‘stringr’ All declared Imports should be used.

mlrintermbo

Version: 0.5.0
GitHub: https://github.com/mb706/mlrintermbo
Source code: https://github.com/cran/mlrintermbo
Date/Publication: 2021-03-01 09:00:06 UTC
Number of recursive dependencies: 115

Run revdep_details(, "mlrintermbo") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

momentuHMM

Version: 1.5.4
GitHub: https://github.com/bmcclintock/momentuHMM
Source code: https://github.com/cran/momentuHMM
Date/Publication: 2021-09-03 04:30:02 UTC
Number of recursive dependencies: 195

Run revdep_details(, "momentuHMM") for more info

checking installed package size ... NOTE installed size is 9.1Mb sub-directories of 1Mb or more: R 1.2Mb doc 1.7Mb libs 5.6Mb

NADIA

Version: 0.4.1
GitHub: https://github.com/ModelOriented/EMMA
Source code: https://github.com/cran/NADIA
Date/Publication: 2021-01-06 15:00:05 UTC
Number of recursive dependencies: 161

Run revdep_details(, "NADIA") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘glmnet’ ‘mlr3learners’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

onemapsgapi

Version: 1.0.0
GitHub: NA
Source code: https://github.com/cran/onemapsgapi
Date/Publication: 2020-02-06 11:00:02 UTC
Number of recursive dependencies: 66

Run revdep_details(, "onemapsgapi") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

OOS

Version: 1.0.0
GitHub: https://github.com/tylerJPike/OOS
Source code: https://github.com/cran/OOS
Date/Publication: 2021-03-17 13:20:20 UTC
Number of recursive dependencies: 131

Run revdep_details(, "OOS") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

partR2

Version: 0.9.1
GitHub: https://github.com/mastoffel/partR2
Source code: https://github.com/cran/partR2
Date/Publication: 2021-01-18 16:30:04 UTC
Number of recursive dependencies: 91

Run revdep_details(, "partR2") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.

pavo

Version: 2.7.1
GitHub: https://github.com/rmaia/pavo
Source code: https://github.com/cran/pavo
Date/Publication: 2021-09-21 13:10:21 UTC
Number of recursive dependencies: 87

Run revdep_details(, "pavo") for more info

checking whether package ‘pavo’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/parallelly/revdep/checks/pavo/new/pavo.Rcheck/00install.out’ for details.

photosynthesis

Version: 2.0.1
GitHub: https://github.com/cdmuir/photosynthesis
Source code: https://github.com/cran/photosynthesis
Date/Publication: 2021-07-01 04:30:02 UTC
Number of recursive dependencies: 104

Run revdep_details(, "photosynthesis") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: | |=================================== | 50% | |======================================================================| 100%[ FAIL 6 | WARN 0 | SKIP 0 | PASS 149 ]

══ Failed tests ════════════════════════════════════════════════════════════════ ... Wt1 not equal to Wt2. Attributes: < Modes: list, NULL > Attributes: < Lengths: 2, 0 > Attributes: < names for target but not for current > Attributes: < current is not list-like > target is units, current is numeric

[ FAIL 6 | WARN 0 | SKIP 0 | PASS 149 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: doc 3.4Mb help 1.1Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

phylolm

Version: 2.6.2
GitHub: https://github.com/lamho86/phylolm
Source code: https://github.com/cran/phylolm
Date/Publication: 2020-06-22 05:10:08 UTC
Number of recursive dependencies: 41

Run revdep_details(, "phylolm") for more info

checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘geiger’, ‘caper’

PLNmodels

Version: 0.11.6
GitHub: https://github.com/pln-team/PLNmodels
Source code: https://github.com/cran/PLNmodels
Date/Publication: 2022-02-01 16:00:24 UTC
Number of recursive dependencies: 173

Run revdep_details(, "PLNmodels") for more info

checking installed package size ... NOTE installed size is 16.9Mb sub-directories of 1Mb or more: doc 2.0Mb libs 13.8Mb

plumber

Version: 1.1.0
GitHub: https://github.com/rstudio/plumber
Source code: https://github.com/cran/plumber
Date/Publication: 2021-03-24 05:10:02 UTC
Number of recursive dependencies: 81

Run revdep_details(, "plumber") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

ppcseq

Version: 1.2.0
GitHub: https://github.com/stemangiola/ppcseq
Source code: https://github.com/cran/ppcseq
Date/Publication: 2021-10-26
Number of recursive dependencies: 117

Run revdep_details(, "ppcseq") for more info

checking installed package size ... NOTE installed size is 45.6Mb sub-directories of 1Mb or more: data 1.5Mb libs 42.8Mb
checking R code for possible problems ... NOTE .identify_abundant: no visible binding for global variable ‘.’ .identify_abundant: no visible binding for global variable ‘.abundant’ add_exposure_rate: no visible binding for global variable ‘.variable’ add_exposure_rate: no visible binding for global variable ‘S’ add_exposure_rate: no visible binding for global variable ‘exposure rate’ add_partition: no visible binding for global variable ‘.’ add_scaled_counts_bulk.calcNormFactor: no visible binding for global variable ‘transcript’ add_scaled_counts_bulk.get_low_expressed: no visible binding for global ... . .abundant .chain .draw .iteration .lower .upper .upper_2 .value .variable CI G S TMM cc chains dummy exposure rate idx_MPI init l l %>% sd med multiplier nf ppc read count MPI row res_discovery rowid s sample wise data scale_abundance slope symbol MPI row tot tot_filt transcript write_on_disk Consider adding importFrom("base", "row", "sample") importFrom("stats", "sd") importFrom("utils", "data") to your NAMESPACE file.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

ppseq

Version: 0.1.1
GitHub: NA
Source code: https://github.com/cran/ppseq
Date/Publication: 2021-09-09 09:00:02 UTC
Number of recursive dependencies: 100

Run revdep_details(, "ppseq") for more info

checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: doc 5.2Mb

prewas

Version: 1.1.1
GitHub: https://github.com/Snitkin-Lab-Umich/prewas
Source code: https://github.com/cran/prewas
Date/Publication: 2021-04-02 12:20:05 UTC
Number of recursive dependencies: 75

Run revdep_details(, "prewas") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats’ All declared Imports should be used.

promises

Version: 1.2.0.1
GitHub: https://github.com/rstudio/promises
Source code: https://github.com/cran/promises
Date/Publication: 2021-02-11 19:00:02 UTC
Number of recursive dependencies: 67

Run revdep_details(, "promises") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

Prostar

Version: 1.26.4
GitHub: https://github.com/samWieczorek/Prostar
Source code: https://github.com/cran/Prostar
Date/Publication: 2022-01-23
Number of recursive dependencies: 318

Run revdep_details(, "Prostar") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘BiocManager’ ‘DAPAR’ ‘DAPARdata’ ‘DT’ ‘R.utils’ ‘XML’ ‘colourpicker’ ‘data.table’ ‘future’ ‘highcharter’ ‘htmlwidgets’ ‘later’ ‘promises’ ‘rclipboard’ ‘rhandsontable’ ‘sass’ ‘shinyAce’ ‘shinyBS’ ‘shinyTree’ ‘shinyWidgets’ ‘shinycssloaders’ ‘shinyjqui’ ‘shinyjs’ ‘shinythemes’ ‘tibble’ ‘webshot’ All declared Imports should be used.
checking re-building of vignette outputs ... NOTE `` Error(s) in re-building vignettes: ... --- re-building ‘Prostar_UserManual.Rnw’ using Sweave Error: processing vignette 'Prostar_UserManual.Rnw' failed with diagnostics: Running 'texi2dvi' on 'Prostar_UserManual.tex' failed. LaTeX errors: ! LaTeX Error: Filenowidow.sty' not found.

Type X to quit or to proceed, or enter new name. (Default extension: sty) ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘Prostar_UserManual.Rnw’

SUMMARY: processing the following file failed: ‘Prostar_UserManual.Rnw’

Error: Vignette re-building failed. Execution halted ```

PUMP

Version: 1.0.0
GitHub: https://github.com/MDRCNY/PUMP
Source code: https://github.com/cran/PUMP
Date/Publication: 2022-02-09 09:50:05 UTC
Number of recursive dependencies: 129

Run revdep_details(, "PUMP") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘here’ All declared Imports should be used.

QDNAseq

Version: 1.30.0
GitHub: https://github.com/ccagc/QDNAseq
Source code: https://github.com/cran/QDNAseq
Date/Publication: 2021-10-26
Number of recursive dependencies: 80

Run revdep_details(, "QDNAseq") for more info

checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘QDNAseq.Rnw’ using Sweave EM algorithm started ...

Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. Use c() or as.vector() instead.

Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘QDNAseq.Rnw’

SUMMARY: processing the following file failed: ‘QDNAseq.Rnw’

Error: Vignette re-building failed. Execution halted ```

QDNAseq.hg19

Version: 1.24.0
GitHub: https://github.com/tgac-vumc/QDNAseq.hg19
Source code: https://github.com/cran/QDNAseq.hg19
Date/Publication: 2021-10-30
Number of recursive dependencies: 41

Run revdep_details(, "QDNAseq.hg19") for more info

checking installed package size ... NOTE installed size is 35.3Mb sub-directories of 1Mb or more: data 35.3Mb

QDNAseq.mm10

Version: 1.24.0
GitHub: https://github.com/tgac-vumc/QDNAseq.mm10
Source code: https://github.com/cran/QDNAseq.mm10
Date/Publication: 2021-10-30
Number of recursive dependencies: 41

Run revdep_details(, "QDNAseq.mm10") for more info

checking installed package size ... NOTE installed size is 31.2Mb sub-directories of 1Mb or more: data 31.2Mb

qtl2pleio

Version: 1.4.3
GitHub: https://github.com/fboehm/qtl2pleio
Source code: https://github.com/cran/qtl2pleio
Date/Publication: 2020-12-02 22:50:02 UTC
Number of recursive dependencies: 113

Run revdep_details(, "qtl2pleio") for more info

checking installed package size ... NOTE installed size is 20.6Mb sub-directories of 1Mb or more: libs 20.3Mb
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

RAINBOWR

Version: 0.1.29
GitHub: NA
Source code: https://github.com/cran/RAINBOWR
Date/Publication: 2022-01-07 13:53:11 UTC
Number of recursive dependencies: 147

Run revdep_details(, "RAINBOWR") for more info

checking installed package size ... NOTE installed size is 32.6Mb sub-directories of 1Mb or more: libs 31.4Mb

regmedint

Version: 1.0.0
GitHub: https://github.com/kaz-yos/regmedint
Source code: https://github.com/cran/regmedint
Date/Publication: 2022-04-06 20:20:02 UTC
Number of recursive dependencies: 131

Run revdep_details(, "regmedint") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Deriv’ All declared Imports should be used.

remiod

Version: 1.0.0
GitHub: https://github.com/xsswang/remiod
Source code: https://github.com/cran/remiod
Date/Publication: 2022-03-14 08:50:02 UTC
Number of recursive dependencies: 125

Run revdep_details(, "remiod") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘reshape2’ All declared Imports should be used.

rgee

Version: 1.1.3
GitHub: https://github.com/r-spatial/rgee
Source code: https://github.com/cran/rgee
Date/Publication: 2022-03-16 15:50:02 UTC
Number of recursive dependencies: 150

Run revdep_details(, "rgee") for more info

checking installed package size ... NOTE installed size is 8.2Mb sub-directories of 1Mb or more: doc 7.0Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘R6’ All declared Imports should be used.

robotstxt

Version: 0.7.13
GitHub: https://github.com/ropensci/robotstxt
Source code: https://github.com/cran/robotstxt
Date/Publication: 2020-09-03 19:30:02 UTC
Number of recursive dependencies: 68

Run revdep_details(, "robotstxt") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

sapfluxnetr

Version: 0.1.3
GitHub: https://github.com/sapfluxnet/sapfluxnetr
Source code: https://github.com/cran/sapfluxnetr
Date/Publication: 2021-11-19 15:10:02 UTC
Number of recursive dependencies: 78

Run revdep_details(, "sapfluxnetr") for more info

checking data for non-ASCII characters ... NOTE Note: found 4 marked UTF-8 strings

scDiffCom

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/scDiffCom
Date/Publication: 2021-08-17 07:20:05 UTC
Number of recursive dependencies: 245

Run revdep_details(, "scDiffCom") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘utils’ All declared Imports should be used.

sctransform

Version: 0.3.3
GitHub: https://github.com/satijalab/sctransform
Source code: https://github.com/cran/sctransform
Date/Publication: 2022-01-13 08:20:02 UTC
Number of recursive dependencies: 69

Run revdep_details(, "sctransform") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmGamPoi’

sdmApp

Version: 0.0.2
GitHub: https://github.com/Abson-dev/sdmApp
Source code: https://github.com/cran/sdmApp
Date/Publication: 2021-07-07 08:30:02 UTC
Number of recursive dependencies: 167

Run revdep_details(, "sdmApp") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘sp’ All declared Imports should be used.

seer

Version: 1.1.7
GitHub: https://github.com/thiyangt/seer
Source code: https://github.com/cran/seer
Date/Publication: 2021-12-08 05:20:02 UTC
Number of recursive dependencies: 115

Run revdep_details(, "seer") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MASS’ All declared Imports should be used.

sentopics

Version: 0.6.2
GitHub: https://github.com/odelmarcelle/sentopics
Source code: https://github.com/cran/sentopics
Date/Publication: 2022-03-15 13:50:02 UTC
Number of recursive dependencies: 145

Run revdep_details(, "sentopics") for more info

checking installed package size ... NOTE installed size is 13.8Mb sub-directories of 1Mb or more: data 1.2Mb doc 7.4Mb libs 4.8Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘lexicon’
checking data for non-ASCII characters ... NOTE Note: found 3128 marked UTF-8 strings

Seurat

Version: 4.1.0
GitHub: https://github.com/satijalab/seurat
Source code: https://github.com/cran/Seurat
Date/Publication: 2022-01-14 18:32:42 UTC
Number of recursive dependencies: 254

Run revdep_details(, "Seurat") for more info

checking installed package size ... NOTE installed size is 12.0Mb sub-directories of 1Mb or more: R 1.3Mb libs 10.1Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘Signac’

shiny

Version: 1.7.1
GitHub: https://github.com/rstudio/shiny
Source code: https://github.com/cran/shiny
Date/Publication: 2021-10-02 04:30:02 UTC
Number of recursive dependencies: 105

Run revdep_details(, "shiny") for more info

checking installed package size ... NOTE installed size is 9.3Mb sub-directories of 1Mb or more: R 1.6Mb www 6.6Mb

shiny.worker

Version: 0.0.1
GitHub: NA
Source code: https://github.com/cran/shiny.worker
Date/Publication: 2021-01-21 11:00:02 UTC
Number of recursive dependencies: 64

Run revdep_details(, "shiny.worker") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘shiny’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

shinyrecap

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/shinyrecap
Date/Publication: 2019-01-19 23:40:03 UTC
Number of recursive dependencies: 96

Run revdep_details(, "shinyrecap") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘CARE1’ ‘LCMCR’ ‘coda’ ‘conting’ ‘dga’ ‘future’ ‘ggplot2’ ‘ipc’ ‘promises’ ‘reshape’ ‘shinycssloaders’ ‘testthat’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

sigminer

Version: 2.1.3
GitHub: https://github.com/ShixiangWang/sigminer
Source code: https://github.com/cran/sigminer
Date/Publication: 2022-03-10 11:00:02 UTC
Number of recursive dependencies: 204

Run revdep_details(, "sigminer") for more info

checking installed package size ... NOTE installed size is 6.4Mb sub-directories of 1Mb or more: extdata 2.6Mb libs 1.2Mb

simhelpers

Version: 0.1.1
GitHub: https://github.com/meghapsimatrix/simhelpers
Source code: https://github.com/cran/simhelpers
Date/Publication: 2021-02-14 17:50:02 UTC
Number of recursive dependencies: 103

Run revdep_details(, "simhelpers") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘magrittr’ ‘purrr’ ‘rlang’ ‘utils’ All declared Imports should be used.

skpr

Version: 1.1.4
GitHub: https://github.com/tylermorganwall/skpr
Source code: https://github.com/cran/skpr
Date/Publication: 2022-04-08 19:40:02 UTC
Number of recursive dependencies: 125

Run revdep_details(, "skpr") for more info

checking installed package size ... NOTE installed size is 47.8Mb sub-directories of 1Mb or more: libs 46.3Mb

solitude

Version: 1.1.3
GitHub: https://github.com/talegari/solitude
Source code: https://github.com/cran/solitude
Date/Publication: 2021-07-29 20:00:02 UTC
Number of recursive dependencies: 125

Run revdep_details(, "solitude") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘lgr’ All declared Imports should be used.

spacey

Version: 0.1.1
GitHub: https://github.com/mikemahoney218/spacey
Source code: https://github.com/cran/spacey
Date/Publication: 2020-03-14 18:50:02 UTC
Number of recursive dependencies: 88

Run revdep_details(, "spacey") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘rgdal’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

spaMM

Version: 3.11.14
GitHub: NA
Source code: https://github.com/cran/spaMM
Date/Publication: 2022-04-09 23:30:02 UTC
Number of recursive dependencies: 100

Run revdep_details(, "spaMM") for more info

checking package dependencies ... NOTE Packages which this enhances but not available for checking: 'multcomp', 'RLRsim'
checking installed package size ... NOTE installed size is 46.9Mb sub-directories of 1Mb or more: R 2.2Mb libs 43.6Mb

sparrpowR

Version: 0.2.5
GitHub: https://github.com/machiela-lab/sparrpowR
Source code: https://github.com/cran/sparrpowR
Date/Publication: 2022-02-05 00:30:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "sparrpowR") for more info

checking whether package ‘sparrpowR’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/parallelly/revdep/checks/sparrpowR/new/sparrpowR.Rcheck/00install.out’ for details.

SPARSEMODr

Version: 1.1.0
GitHub: https://github.com/NAU-CCL/SPARSEMODr
Source code: https://github.com/cran/SPARSEMODr
Date/Publication: 2021-07-01 17:50:02 UTC
Number of recursive dependencies: 119

Run revdep_details(, "SPARSEMODr") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘geosphere’ ‘lubridate’ ‘tidyverse’ ‘viridis’ All declared Imports should be used.

spatialTIME

Version: 1.2.0
GitHub: https://github.com/FridleyLab/spatialTIME
Source code: https://github.com/cran/spatialTIME
Date/Publication: 2021-09-11 04:10:02 UTC
Number of recursive dependencies: 120

Run revdep_details(, "spatialTIME") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘ggpubr’ ‘pheatmap’ ‘rlist’ ‘stats’ ‘viridis’ All declared Imports should be used.

spatialwarnings

Version: 3.0.3
GitHub: https://github.com/spatial-ews/spatialwarnings
Source code: https://github.com/cran/spatialwarnings
Date/Publication: 2022-03-21 13:00:02 UTC
Number of recursive dependencies: 84

Run revdep_details(, "spatialwarnings") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'indictest.Rd': ‘mgcv’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking installed package size ... NOTE installed size is 6.4Mb sub-directories of 1Mb or more: libs 5.4Mb

sphunif

Version: 1.0.1
GitHub: https://github.com/egarpor/sphunif
Source code: https://github.com/cran/sphunif
Date/Publication: 2021-09-02 07:40:02 UTC
Number of recursive dependencies: 72

Run revdep_details(, "sphunif") for more info

checking installed package size ... NOTE installed size is 20.5Mb sub-directories of 1Mb or more: libs 19.6Mb
checking data for non-ASCII characters ... NOTE Note: found 189 marked UTF-8 strings

spNetwork

Version: 0.2.1
GitHub: https://github.com/JeremyGelb/spNetwork
Source code: https://github.com/cran/spNetwork
Date/Publication: 2021-10-30 09:50:02 UTC
Number of recursive dependencies: 151

Run revdep_details(, "spNetwork") for more info

checking installed package size ... NOTE installed size is 22.1Mb sub-directories of 1Mb or more: doc 1.9Mb extdata 4.1Mb libs 15.5Mb

ssdtools

Version: 1.0.0
GitHub: https://github.com/bcgov/ssdtools
Source code: https://github.com/cran/ssdtools
Date/Publication: 2022-04-01 07:10:02 UTC
Number of recursive dependencies: 141

Run revdep_details(, "ssdtools") for more info

checking installed package size ... NOTE installed size is 17.6Mb sub-directories of 1Mb or more: doc 1.2Mb libs 15.1Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘ssddata’ All declared Imports should be used.

stars

Version: 0.5-5
GitHub: https://github.com/r-spatial/stars
Source code: https://github.com/cran/stars
Date/Publication: 2021-12-19 03:20:02 UTC
Number of recursive dependencies: 148

Run revdep_details(, "stars") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘starsdata’
checking installed package size ... NOTE installed size is 8.6Mb sub-directories of 1Mb or more: doc 2.3Mb nc 4.5Mb

steps

Version: 1.2.1
GitHub: NA
Source code: https://github.com/cran/steps
Date/Publication: 2021-03-03 09:20:10 UTC
Number of recursive dependencies: 87

Run revdep_details(, "steps") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(raster) Loading required package: sp > library(steps) > > test_check("steps") ... ▆
1. └─steps::simulation(...) at test_simulation_results_class.R:516:2
2. └─base::tryCatch(...)
3. └─base tryCatchList(expr, classes, parentenv, handlers)
4. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[3L]
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 45 ] Error: Test failures Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘custom_function_example.Rmd’ using rmarkdown Loading required package: sp

Attaching package: 'future'

The following object is masked from 'package:raster':
```
values
```
...
```
values
```
--- finished re-building ‘kangaroo_model_example.Rmd’

SUMMARY: processing the following file failed: ‘custom_function_example.Rmd’

Error: Vignette re-building failed. Execution halted ```

synergyfinder

Version: 3.2.10
GitHub: NA
Source code: https://github.com/cran/synergyfinder
Date/Publication: 2022-03-31
Number of recursive dependencies: 181

Run revdep_details(, "synergyfinder") for more info

checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘scales’ Namespaces in Imports field not imported from: ‘future’ ‘gstat’ ‘nleqslv’ ‘sp’ ‘tidyverse’ All declared Imports should be used.
checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'PlotDoseResponse': PlotDoseResponse Code: function(data, block_ids = c(1), drugs = c(1, 2), adjusted = TRUE, statistic = NULL, summary_statistic = "mean", high_value_color = "#FF0000", low_value_color = "#00FF00", point_color = "#C24B40", curve_color = "black", curve_ylim = NULL, curve_grid = TRUE, text_size_scale = 1, heatmap_text_label_size_scale = 1, heatmap_text_label_color = "#000000", heatmap_color_range = NULL, curve_plot_title = NULL, ... high_value_color = "#A90217", low_value_color = "#2166AC", text_size_scale = 1, heatmap_text_label_size_scale = 1, heatmap_text_label_color = "#000000", grid = TRUE, dynamic = FALSE, display = TRUE, save_file = FALSE, file_type = "pdf", file_name = NULL, file_path = NULL, height = 6, width = 6, units = "in") Mismatches in argument default values: Name: 'high_value_color' Code: "#FF0000" Docs: "#A90217" Name: 'low_value_color' Code: "#00FF00" Docs: "#2166AC"
checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: doc 5.7Mb
checking R code for possible problems ... NOTE .Extract2DrugPlotData: no visible binding for global variable ‘input_type’ .Extract2DrugPlotData: no visible binding for global variable ‘block_id’ .Extract2DrugPlotData: no visible binding for global variable ‘value’ .Extract2DrugPlotData: no visible binding for global variable ‘left’ .Extract2DrugPlotData: no visible binding for global variable ‘right’ .Extract2DrugPlotData: no visible binding for global variable ‘conc1’ .Extract2DrugPlotData: no visible binding for global variable ‘conc2’ .Extract2DrugPlotData: no visible binding for global variable ‘text’ ... block_id color conc1 conc2 css data end head id input_type label left maxn metric n nn pred r response response_CI95 response_mean response_origin response_origin_CI95 response_origin_mean response_origin_sd response_origin_sem response_sd response_sem right start synergy text theta value x y Consider adding importFrom("graphics", "text") importFrom("stats", "end", "start") importFrom("utils", "data", "head") to your NAMESPACE file.

tableschema.r

Version: 1.1.1
GitHub: https://github.com/frictionlessdata/tableschema-r
Source code: https://github.com/cran/tableschema.r
Date/Publication: 2020-03-12 12:40:02 UTC
Number of recursive dependencies: 65

Run revdep_details(, "tableschema.r") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘iterators’ All declared Imports should be used.
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘parsedate’
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

targeted

Version: 0.2.0
GitHub: https://github.com/kkholst/targeted
Source code: https://github.com/cran/targeted
Date/Publication: 2021-10-26 14:40:02 UTC
Number of recursive dependencies: 76

Run revdep_details(, "targeted") for more info

checking installed package size ... NOTE installed size is 13.6Mb sub-directories of 1Mb or more: libs 12.7Mb

text

Version: 0.9.50
GitHub: https://github.com/OscarKjell/text
Source code: https://github.com/cran/text
Date/Publication: 2022-02-12 23:10:02 UTC
Number of recursive dependencies: 148

Run revdep_details(, "text") for more info

checking data for non-ASCII characters ... NOTE Note: found 3 marked UTF-8 strings

TreeSearch

Version: 1.1.1
GitHub: https://github.com/ms609/TreeSearch
Source code: https://github.com/cran/TreeSearch
Date/Publication: 2022-03-22 10:10:28 UTC
Number of recursive dependencies: 115

Run revdep_details(, "TreeSearch") for more info

checking installed package size ... NOTE installed size is 5.8Mb sub-directories of 1Mb or more: datasets 1.6Mb libs 2.2Mb

TriDimRegression

Version: 1.0.1
GitHub: https://github.com/alexander-pastukhov/tridim-regression
Source code: https://github.com/cran/TriDimRegression
Date/Publication: 2021-10-05 08:30:08 UTC
Number of recursive dependencies: 98

Run revdep_details(, "TriDimRegression") for more info

checking installed package size ... NOTE installed size is 41.3Mb sub-directories of 1Mb or more: libs 40.7Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RcppParallel’ ‘rstantools’ All declared Imports should be used.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

tsfeatures

Version: 1.0.2
GitHub: https://github.com/robjhyndman/tsfeatures
Source code: https://github.com/cran/tsfeatures
Date/Publication: 2020-06-07 16:10:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "tsfeatures") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

TSstudio

Version: 0.1.6
GitHub: https://github.com/RamiKrispin/TSstudio
Source code: https://github.com/cran/TSstudio
Date/Publication: 2020-01-21 05:30:02 UTC
Number of recursive dependencies: 142

Run revdep_details(, "TSstudio") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘forecastHybrid’ All declared Imports should be used.

txshift

Version: 0.3.8
GitHub: https://github.com/nhejazi/txshift
Source code: https://github.com/cran/txshift
Date/Publication: 2022-02-09 22:30:02 UTC
Number of recursive dependencies: 110

Run revdep_details(, "txshift") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’

UCSCXenaShiny

Version: 1.1.5
GitHub: https://github.com/openbiox/UCSCXenaShiny
Source code: https://github.com/cran/UCSCXenaShiny
Date/Publication: 2022-01-15 11:32:42 UTC
Number of recursive dependencies: 187

Run revdep_details(, "UCSCXenaShiny") for more info

checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: doc 1.5Mb shinyapp 3.3Mb

updog

Version: 2.1.2
GitHub: https://github.com/dcgerard/updog
Source code: https://github.com/cran/updog
Date/Publication: 2022-01-24 21:50:02 UTC
Number of recursive dependencies: 145

Run revdep_details(, "updog") for more info

checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: libs 6.0Mb

vip

Version: 0.3.2
GitHub: https://github.com/koalaverse/vip
Source code: https://github.com/cran/vip
Date/Publication: 2020-12-17 16:20:02 UTC
Number of recursive dependencies: 193

Run revdep_details(, "vip") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

vivid

Version: 0.2.3
GitHub: NA
Source code: https://github.com/cran/vivid
Date/Publication: 2021-11-20 01:30:02 UTC
Number of recursive dependencies: 202

Run revdep_details(, "vivid") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘zenplots’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RColorBrewer’ ‘colorspace’ ‘tidyr’ All declared Imports should be used.

vmeasur

Version: 0.1.4
GitHub: NA
Source code: https://github.com/cran/vmeasur
Date/Publication: 2021-11-11 19:00:02 UTC
Number of recursive dependencies: 122

Run revdep_details(, "vmeasur") for more info

checking whether package ‘vmeasur’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/parallelly/revdep/checks/vmeasur/new/vmeasur.Rcheck/00install.out’ for details.

XNAString

Version: 1.2.2
GitHub: NA
Source code: https://github.com/cran/XNAString
Date/Publication: 2021-11-30
Number of recursive dependencies: 98

Run revdep_details(, "XNAString") for more info

checking installed package size ... NOTE installed size is 10.8Mb sub-directories of 1Mb or more: libs 9.7Mb
checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file.
checking compiled code ... NOTE ``` File ‘XNAString/libs/XNAString.so’: Found ‘rand’, possibly from ‘rand’ (C) Object: ‘./ViennaRNA/utils/utils.o’ Found ‘srand’, possibly from ‘srand’ (C) Object: ‘./ViennaRNA/utils/utils.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ```

HenrikBengtsson/parallelly documentation built on Feb. 24, 2025, 2:40 a.m.

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HenrikBengtsson/parallelly Enhancing the 'parallel' Package

revdep/R_PARALLELLY_AVAILABLECORES_SYSTEM=1/problems.md In HenrikBengtsson/parallelly: Enhancing the 'parallel' Package

ACE

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AIPW

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AlpsNMR

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aroma.core

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autohd

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BAMBI

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BatchGetSymbols

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bcmaps

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BEKKs

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bigDM

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bigsnpr

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bigstatsr

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biscuiteer

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bistablehistory

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blavaan

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blockCV

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bootUR

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brms

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cfbfastR

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ChromSCape

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civis

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Clustering

Newly broken

Name: best_ranked_external_metrics

Title: Best rated external metrics.

Aliases: best_ranked_external_metrics

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codebook

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condvis2

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cSEM

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CSGo

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datapackage.r

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delayed

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dipsaus

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dispositionEffect

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dragon

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easyalluvial

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EFAtools

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envi

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EpiNow2

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epitweetr

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fipe

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HenrikBengtsson/parallelly
Enhancing the 'parallel' Package

revdep/R_PARALLELLY_AVAILABLECORES_SYSTEM=1/problems.md
In HenrikBengtsson/parallelly: Enhancing the 'parallel' Package