Files in IOM-Research/CEMRA
COVID Exposure Model and Risk Application
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CEMRA.Rproj
DESCRIPTION
NAMESPACE
R/COVIDinfectioncalculator.R
R/COVIDinfectioncalculatorBATCHrelativecontributions.R
R/_disable_autoload.R
R/app_config.R
R/app_server.R
R/app_ui.R
R/changemetadata.R
R/infectiousnessprofiles_paper.R
R/logriskplots.R
R/logriskplots_paper.R
R/metadata.R
R/round_percent.R
R/run_app.R
R/run_model.R
R/runfaster.R
R/waffle_old.R
README.md
app.R
data/docs/acknowledgements.html
data/docs/controls.html
data/docs/howtouse.html
data/docs/infectiousness.html
data/docs/info.html
data/docs/scenarios.html
data/figures/Figure1.png
data/figures/Model.graphml
data/figures/Model.png
data/metadata.RData
data/metadata.csv
data/output/Figure1_paper.pdf
data/output/Figure1_paper.png
data/output/Figure1_paper_greyscale.png
data/output/Figure2_legend_greyscale.PNG
data/output/Figure2_paper.pdf
data/output/Figure2_paper.png
data/output/Figure2_papergreyscale.png
data/output/Hospital.csv
data/output/Hospital/Hospital_Paper_Main.csv
data/output/Hospital/Hospital_singlepatient_moderate_peak.csv
data/output/Hospital_singlepatient.csv
data/output/Office.csv
data/output/Office/Office_comp_meeting.csv
data/output/Office/Office_meetings.csv
data/output/Office/Office_meetings_PFURNAratio.csv
data/output/Office/Office_meetings_cough.csv
data/output/Office/Office_meetings_coughs.csv
data/output/Office/Office_meetings_depositfrac.csv
data/output/Office/Office_meetings_dropletdist.csv
data/output/Office/Office_meetings_emm.csv
data/output/Office/Office_meetings_mitigations.csv
data/output/Office/Office_meetings_sensitivity.csv
data/output/Office/Office_meetings_sensitivityposthoc.csv
data/output/Office/Office_meetings_speaktosurf.csv
data/output/Office_MR_moderatepeak.csv
data/output/Office_MR_moderatepeak2.csv
data/output/Office_MR_moderatepeak_surfacediluttion.csv
data/output/Office_comp_meeting.csv
data/output/Office_meetings.csv
data/output/Office_meetings_cough.csv
data/output/Office_meetings_coughs.csv
data/output/Office_meetings_dropletdist.csv
data/output/Office_meetings_handfacehosp.csv
data/output/Office_meetings_infstage.csv
data/output/Office_meetings_mitigations.csv
data/output/Office_meetings_speaktosurf.csv
data/output/Office_meetings_surfacearea.csv
data/output/Office_openplan_moderatepeak.csv
data/output/test.csv
data/runs/Hospital/Hospital_Paper_Main.csv
data/runs/Hospital/Hospital_singlepatient_extremelyhigh_peak.csv
data/runs/Hospital/Hospital_singlepatient_moderate_peak.csv
data/runs/Hospital/Hospital_singlepatienttreatment_moderate_peak.csv
data/runs/Hospital/Hospital_twopatient_moderate_peak.csv
data/runs/Office/Office_comp_meeting.csv
data/runs/Office/Office_meetings.csv
data/runs/Office/Office_meetings2.csv
data/runs/Office/Office_meetings_cough.csv
data/runs/Office/Office_meetings_emm.csv
data/runs/Office/Office_meetings_mitigations.csv
data/runs/Office/Office_meetings_sensitivity.csv
data/runs/Office/Office_meetings_sensitivityposthoc.csv
data/runs/Office/old_office/Office_MR_moderatepeak.csv
data/runs/Office/old_office/Office_MR_moderatepeak2.csv
data/runs/Office/old_office/Office_MR_moderatepeak_surfacediluttion.csv
data/runs/Office/old_office/Office_meetings_PFURNAratio.csv
data/runs/Office/old_office/Office_meetings_cough.csv
data/runs/Office/old_office/Office_meetings_coughs.csv
data/runs/Office/old_office/Office_meetings_depositfrac.csv
data/runs/Office/old_office/Office_meetings_dropletdist.csv
data/runs/Office/old_office/Office_meetings_emm.csv
data/runs/Office/old_office/Office_meetings_handfacehosp.csv
data/runs/Office/old_office/Office_meetings_infstage.csv
data/runs/Office/old_office/Office_meetings_mitigations.xlsx
data/runs/Office/old_office/Office_meetings_speaktosurf.csv
data/runs/Office/old_office/Office_meetings_surfacearea.csv
data/runs/oldruns/Hospital.csv
data/runs/oldruns/Hospital_Model_Testing.csv
data/runs/oldruns/Hospital_Paper_Main.csv
data/runs/oldruns/Hospital_Paper_Main2.csv
data/runs/oldruns/Hospital_Paper_Main_Chen.csv
data/runs/oldruns/Hospital_Paper_Sensitivity.csv
data/runs/oldruns/Hospital_singlepatient.csv
data/runs/oldruns/Hospital_twopatient.csv
data/runs/oldruns/Office.csv
data/runs/oldruns/Restaurant.csv
data/runs/oldruns/SmallRetailer.csv
data/runs/oldruns/Test.csv
data/runs/test.csv
data/scenarios.csv
deploy/CEMRA_0.0.0.9000.tar.gz
deploy/Dockerfile
deploy/Dockerfile_base
deploy/README
deploy/renv.lock.prod
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/run_dev.R
inst/app/www/About.Rmd
inst/app/www/CSO_logo.jpg
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inst/app/www/SEPAhospitalsetting.png
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inst/extdata/runs/Office/old_office/Office_meetings_speaktosurf.csv
inst/extdata/runs/Office/old_office/Office_meetings_surfacearea.csv
inst/extdata/runs/oldruns/Hospital.csv
inst/extdata/runs/oldruns/Hospital_Model_Testing.csv
inst/extdata/runs/oldruns/Hospital_Paper_Main.csv
inst/extdata/runs/oldruns/Hospital_Paper_Main2.csv
inst/extdata/runs/oldruns/Hospital_Paper_Main_Chen.csv
inst/extdata/runs/oldruns/Hospital_Paper_Sensitivity.csv
inst/extdata/runs/oldruns/Hospital_singlepatient.csv
inst/extdata/runs/oldruns/Hospital_twopatient.csv
inst/extdata/runs/oldruns/Office.csv
inst/extdata/runs/oldruns/Restaurant.csv
inst/extdata/runs/oldruns/SmallRetailer.csv
inst/extdata/runs/oldruns/Test.csv
inst/extdata/runs/test.csv
inst/golem-config.yml
man/metadata.Rd
man/run_app.Rd
renv/.gitignore
renv/activate.R
renv/settings.dcf
rsconnect/shinyapps.io/thebest/CEMRA.dcf
