Files in IdahoAgStats/factcuratoR
Functions to curate FACT data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/access_controlled_vocab.R R/confront_data.R R/create_dm.R R/create_intid.R R/create_rules.R R/factcuratoR-package.R R/factcurator_wrappers.R R/find_col_info.R R/match_variety_create_new_names_module.R R/match_variety_exact_module.R R/match_variety_final_matches_module.R R/match_variety_fns.R R/match_variety_fuzzy_module.R R/match_variety_names_check.R R/match_variety_process_fuzzy_module.R R/standardize_cols_by_cb.R R/validate_colnames.R README.md
_pkgdown.yml
docs/404.html
docs/LICENSE.html
docs/articles/example_cultivar_matching.html
docs/articles/index.html
docs/articles/intro_codebooks.html
docs/articles/intro_codebooks_files/DiagrammeR-styles-0.2/styles.css
docs/articles/intro_codebooks_files/grViz-binding-1.0.11/grViz.js
docs/articles/intro_codebooks_files/htmltools-fill-0.5.8.1/fill.css
docs/articles/intro_codebooks_files/htmlwidgets-1.6.4/htmlwidgets.js
docs/articles/intro_codebooks_files/viz-1.8.2/viz.js
docs/articles/intro_validation.html
docs/authors.html
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.4.2/css/all.css
docs/deps/font-awesome-6.4.2/css/all.min.css
docs/deps/font-awesome-6.4.2/css/v4-shims.css
docs/deps/font-awesome-6.4.2/css/v4-shims.min.css
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/extra.css
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/assure_var_id.html
docs/reference/bind_fuzzymatches.html
docs/reference/check.anymatch.html
docs/reference/check.matches.html
docs/reference/clean_manualfuzzy.html
docs/reference/collect_final_matches.html
docs/reference/collect_matches.html
docs/reference/confront_data.html
docs/reference/create.rules.html
docs/reference/create_dm.html
docs/reference/create_intid.html
docs/reference/create_names_nomatch.html
docs/reference/create_new_db_entries.html
docs/reference/create_rules.html
docs/reference/deprecated_process_fuzzymatch.html
docs/reference/do_exactmatch.html
docs/reference/extract_trail_digits.html
docs/reference/factcuratoR-package.html
docs/reference/factcuratoR.html
docs/reference/find_col_info.html
docs/reference/find_entries_raw_names.html
docs/reference/find_fuzzymatch.html
docs/reference/get.variety_db.html
docs/reference/get_col_index.html
docs/reference/get_cultivar_rename.html
docs/reference/get_variety_db.html
docs/reference/index.html
docs/reference/is_string_overlap.html
docs/reference/list.db_books.html
docs/reference/list.db_var.html
docs/reference/list_db_books.html
docs/reference/list_db_var.html
docs/reference/match_newdb.html
docs/reference/process_fuzzymatch.html
docs/reference/process_std_new_names.html
docs/reference/readin.db.html
docs/reference/readin_db.html
docs/reference/readin_db_init.html
docs/reference/return.matchgroups.html
docs/reference/return_validate_message.html
docs/reference/rm.alias_dupmatch.html
docs/reference/standardize_cols_by_cb.html
docs/reference/stringdist.variety.html
docs/reference/validate_colnames.html
docs/search.json
docs/sitemap.xml
factcuratoR.Rproj
inst/extdata/example_cultivar_matching/auxiliary_files/fuzzymatch_blends_status.csv
inst/extdata/example_cultivar_matching/auxiliary_files/fuzzymatch_status.csv
inst/extdata/example_cultivar_matching/auxiliary_files/standardize_new_names_aux.csv
inst/extdata/example_cultivar_matching/auxiliary_files/standardize_new_names_new.csv
inst/extdata/example_cultivar_matching/example_cultivar_matching.csv
inst/extdata/example_cultivar_matching/output/add_fuzzy_to_cv_rename.csv
inst/extdata/example_cultivar_matching/output/add_to_cv_rename.csv
inst/extdata/example_cultivar_matching/output/add_to_db.csv
inst/extdata/example_cultivar_matching/output/add_to_new_std_name.csv
inst/extdata/example_cultivar_matching/output/final_matches.csv
inst/extdata/example_cultivar_matching/output/fuzzy_check.csv
inst/extdata/example_cultivar_matching/output/fuzzymatch.csv
inst/extdata/example_cultivar_matching/output/standardize_new_names.csv
inst/extdata/example_cultivar_matching/output_blends/add_fuzzy_to_cv_rename.csv
inst/extdata/example_cultivar_matching/output_blends/final_matches.csv
inst/extdata/example_cultivar_matching/output_blends/fuzzy_check.csv
inst/extdata/example_cultivar_matching/output_blends/fuzzymatch.csv
inst/extdata/example_cultivar_matching/output_blends/standardize_new_names.csv
inst/pkgdown.yml
man/assure_var_id.Rd man/bind_fuzzymatches.Rd man/check.anymatch.Rd man/check.matches.Rd man/clean_manualfuzzy.Rd man/collect_final_matches.Rd man/collect_matches.Rd man/confront_data.Rd man/create_dm.Rd man/create_intid.Rd man/create_names_nomatch.Rd man/create_new_db_entries.Rd man/create_rules.Rd man/deprecated_process_fuzzymatch.Rd man/do_exactmatch.Rd man/extract_trail_digits.Rd man/factcuratoR-package.Rd man/find_col_info.Rd man/find_entries_raw_names.Rd man/find_fuzzymatch.Rd man/get_col_index.Rd man/get_cultivar_rename.Rd man/get_variety_db.Rd man/is_string_overlap.Rd man/list_db_books.Rd man/list_db_var.Rd man/match_newdb.Rd man/process_fuzzymatch.Rd man/process_std_new_names.Rd man/readin_db.Rd man/readin_db_init.Rd man/return.matchgroups.Rd man/return_validate_message.Rd man/rm.alias_dupmatch.Rd man/standardize_cols_by_cb.Rd man/stringdist.variety.Rd man/validate_colnames.Rd
pkgdown/extra.css
tests/testthat.R tests/testthat/test-access_controlled_vocab.R tests/testthat/test-confront_data.R tests/testthat/test-create_dm.R tests/testthat/test-create_intid.R tests/testthat/test-create_rules.R tests/testthat/test-find_col_info.R tests/testthat/test-match_variety_create_new_names_module.R tests/testthat/test-match_variety_exact_module.R tests/testthat/test-match_variety_final_matches_module.R tests/testthat/test-match_variety_fns.R tests/testthat/test-match_variety_fuzzy_module.R tests/testthat/test-match_variety_process_fuzzy_module.R tests/testthat/test-standardize_cols_by_cb.R tests/testthat/test-validate_colnames.R
tests/testthat/test_controlled_vocab/codebooks_all_db.csv
tests/testthat/test_controlled_vocab/crop_market_classes.csv
tests/testthat/test_controlled_vocab/cultivar_barley.csv
tests/testthat/test_controlled_vocab/cultivar_fill.csv
tests/testthat/test_controlled_vocab/cultivar_wheat.csv
tests/testthat/test_controlled_vocab/cv_rename.csv
tests/testthat/test_controlled_vocab/grower_cooperator.csv
tests/testthat/test_controlled_vocab/locations.csv
tests/testthat/test_controlled_vocab/nursery.csv
tests/testthat/test_controlled_vocab/traits.csv
tests/testthat/test_match_variety_files/example_blends.csv
tests/testthat/test_match_variety_files/example_cultivar_matching.csv
tests/testthat/test_match_variety_files/example_cultivar_matching_db.csv
tests/testthat/test_match_variety_files/output/add_fuzzy_to_cv_rename.csv
tests/testthat/test_match_variety_files/output/add_to_cv_rename.csv
tests/testthat/test_match_variety_files/output/add_to_db.csv
tests/testthat/test_match_variety_files/output/add_to_new_std_name.csv
tests/testthat/test_match_variety_files/output/final_matches.csv
tests/testthat/test_match_variety_files/output/final_matches2023.csv
tests/testthat/test_match_variety_files/output/fuzzy_check.csv
tests/testthat/test_match_variety_files/output/fuzzymatch.csv
tests/testthat/test_match_variety_files/output/standardize_new_names.csv
tests/testthat/test_match_variety_files/standardize_new_names_aux.csv
tests/testthat/test_match_variety_files/test_file_marshall_fuzzy_aux.csv
tests/testthat/test_match_variety_files/test_file_marshall_output_fuzzymatch.csv
tests/testthat/validate_repex.R vignettes/example_cultivar_matching.Rmd vignettes/intro_codebooks.Rmd vignettes/intro_validation.Rmd
IdahoAgStats/factcuratoR documentation built on Nov. 15, 2024, 11:11 a.m.