Man pages for IntiQuan/populationIsoboles
Calculate isoboles efficiently
| aggregateIsoboles | Calculate Confidence Level Response Surface |
| arrange_isobole | Arrange the isobole more robustly |
| arrange_isobole_internal | Reorder rows of data.frame such that the shortest line is... |
| determineRecalcNeccessary | Determine if calculated quantities need to be updated |
| dot-axlab | Make nice axis label |
| dot-plotDocumentation | Documentation for plotting functions |
| ensure_cross_in_vec | Ensure a number is in a vector |
| extract_popkFromFilename | Get the identifier of a population from the filenam |
| fastIsoboles | Grid refinement algorithm to calculate isoboles |
| fastIsoboles_iteration | Do one iteration of the grid refinement algorithm |
| fastIsoboles_iteration0 | Initialize the grid refinement algorithm |
| get_area | Get area enclosed by isobole and right part of the grid |
| getCompoundInfo | Try getting the default Compound info |
| get_gridlens | Construct a list of grid lenghts |
| get_isobole_path | Interpolate grid values and run contourLines to obtain... |
| getPathlength | Calculate the isobole path length |
| ggplot_PI | ggplot_PI |
| gridInfo_default | Generate the default characteristics of the simulation grid |
| list.files.zipped | This function is an extension base::list.files. In addition... |
| output_gridrefinement_results | Output the results of the grid-refinement algorithm in a... |
| PIcolors | Nice colors |
| PI_files | Generate default output file paths |
| PI_plotInternalAlgoExample | Plot multiple plots to demonstrate the algorithm |
| PI_plotInternalCrossSections | See PI_plotInternalMonoDistributions |
| PI_plotInternalMonoDistributions | Plot the distributions of the mono doses |
| PI_plotInternalQuantiles | Plot spaghetti with quantiles |
| PI_plotInternalRibbon2 | Plot ribbon which is robust with respect to shape |
| PI_plotInternalSingleExample | Plot one population isobole only |
| PI_plotInternalSpaghetti | Plot isobole spaghetti plot |
| PI_quickTableItermax | Summarize the number of iterations needed across populations |
| PI_readItermax | Functions to read simulation results |
| PI_readOutsideGrid | Functions to read simulation results |
| PI_unzip | Unzip files with pre-specified unzipping options |
| PI_zip | Zip files belonging to an isobole simulation |
| plotCLRS | Plot confidence level response surface |
| plotQuantiles | Quick plotting of simulation results |
| plotRibbon | Quick plotting of simulation results |
| plotSpaghetti | Quick plotting of simulation results |
| readRDS.zipped | Reads an RDS file which can be stored in a xxxx.zip file The... |
| removeOutliers | Remove points which are causing trouble |
| runPopulationIsoboles | Run population isoboles simulation |
| scale_color_PI | scalecolorPI Copied from dMod |
| scale_fill_PI | scalefillPI Copied from dMod |
| seqminmax | seq including min and max |
| theme_PI | Nice ggplot theme |
