API for JClavel/mvMORPH
Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
| Global functions | |
|---|---|
| .aov.mvgls.I | Source code |
| .aov.mvgls.mar | Source code |
| .aov.mvgls.perm.I | Source code |
| .aov.mvgls.perm.mar | Source code |
| .check_par_results | Source code |
| .check_samples | Source code |
| .corrStr | Source code |
| .derivllik | Source code |
| .hypothesis | Source code |
| .linearhypothesis.gls | Source code |
| .loocvPhylo | Source code |
| .loocvVect | Source code |
| .make.x | Source code |
| .makePenaltyQuad | Source code |
| .multivTests | Source code |
| .mvGLS | Source code |
| .onAttach | Source code |
| .parallel_mapply | Source code |
| .penalizedCov | Source code |
| .prepModel | Source code |
| .pruning_general | Source code |
| .rate_guess | Source code |
| .regularizedLik | Source code |
| .regularizedMahalanobis | Source code |
| .resid_cov_phylo | Source code |
| .scaleStruct | Source code |
| .setBounds | Source code |
| .sqM | Source code |
| .sqM1 | Source code |
| .startGuess | Source code |
| .targetM | Source code |
| .transformPhylo | Source code |
| .transformTree | Source code |
| .vcvPhyloInternal | Source code |
| .vec | Source code |
| AIC.mvgls | Source code |
| AIC.mvmorph | Source code |
| AICc | Source code |
| AICc.mvmorph | Source code |
| BIC.mvgls | Source code |
| EIC | Man page Source code |
| EIC.mvgls | Source code |
| GIC | Man page Source code |
| GIC.mvgls | Source code |
| LRT | Man page Source code |
| StationaryVariance | Source code |
| Stationary_to_scatter | Source code |
| aicw | Man page Source code |
| ancestral | Man page Source code |
| ancestral.mvgls | Source code |
| build.chol | Source code |
| coef.mvgls | Man page Source code |
| dfaShape | Man page Source code |
| effectsize | Man page Source code |
| estim | Man page Source code |
| eval_polytom | Source code |
| fitted.mvgls | Man page Source code |
| generate_tree_structure | Source code |
| halflife | Man page Source code |
| halflife.mvmorph | Source code |
| indiceReg | Source code |
| indiceTip | Source code |
| logLik.mvgls | Source code |
| logLik.mvmorph | Source code |
| loglik_mvmorph | Source code |
| mTime | Source code |
| manova.gls | Man page Source code |
| matrixParam | Source code |
| multD | Source code |
| mv.Precalc | Man page Source code |
| mvBM | Man page Source code |
| mvEB | Man page Source code |
| mvLL | Man page Source code |
| mvMORPH | Man page |
| mvMORPH-package | Man page |
| mvOU | Man page Source code |
| mvOUTS | Man page Source code |
| mvRWTS | Man page Source code |
| mvSHIFT | Man page Source code |
| mvSIM | Man page Source code |
| mvgls | Man page Source code |
| mvgls.dfa | Man page Source code |
| mvgls.pca | Man page Source code |
| mvols | Man page Source code |
| mvqqplot | Man page Source code |
| newList | Source code |
| pairwise.contrasts | Man page Source code |
| pairwise.glh | Man page Source code |
| pathToNode | Source code |
| pcaShape | Man page Source code |
| phyllostomid | Man page |
| plot.manova.mvgls | Source code |
| plot.mvgls | Source code |
| plot.mvgls.dfa | Source code |
| plot.pairs.mvgls | Source code |
| predict.mvgls | Man page Source code |
| predict.mvgls.dfa | Man page Source code |
| prepWOU | Source code |
| print.aic.mvgls | Source code |
| print.bic.mvgls | Source code |
| print.effects.mvgls | Source code |
| print.eic.mvgls | Source code |
| print.gic.mvgls | Source code |
| print.manova.mvgls | Source code |
| print.mvgls | Source code |
| print.mvgls.dfa | Source code |
| print.mvgls.dfa.predict | Source code |
| print.mvmorph.acdc | Source code |
| print.mvmorph.aicw | Source code |
| print.mvmorph.bm | Source code |
| print.mvmorph.estim | Source code |
| print.mvmorph.llik | Source code |
| print.mvmorph.lrt | Source code |
| print.mvmorph.ou | Source code |
| print.mvmorph.precalc | Source code |
| print.mvmorph.shift | Source code |
| print.pairs.mvgls | Source code |
| print.summary.mvgls | Source code |
| pruning | Man page Source code |
| rate_pic | Source code |
| ratevalue | Source code |
| regimeList | Source code |
| residuals.mvgls | Man page Source code |
| rmvnorm_simul | Source code |
| simulate.mvgls | Source code |
| simulate.mvmorph | Source code |
| startParam | Source code |
| startParamSigma | Source code |
| stationary | Man page Source code |
| stationary.mvmorph | Source code |
| summary.mvgls | Source code |
| summary.mvmorph | Source code |
| symPar | Source code |
| user_guess | Source code |
| varBM | Source code |
| vcov.mvgls | Man page Source code |
| vcvPhyloInternal | Source code |
| vcvSplit | Source code |
| vcvts | Source code |
