Files in JDench/SHAPE_library

Simulated Haploid Asexual Population Evolution

R/sourceSHAPE.R README.md SHAPE_manual.pdf SHAPE_templates/SHAPE_experimentalDesign.v.1.r SHAPE_templates/SHAPE_parameters.v.1.r SHAPE_templates/SHAPE_runBody.v.1.r man/addDrift.Rd man/addQuotes.Rd man/adjustBirths.Rd man/birthFunction.Rd man/buildPedigree.Rd man/calc_relativeFitness.Rd man/compute_distGrowth.Rd man/createGenotypes.Rd man/create_genotypeFrame.Rd man/deathFunction.Rd man/defineNeighbours.Rd man/defineSHAPE.Rd man/expGrowth.Rd man/extractInfo_focalID.Rd man/extract_popDemographics.Rd man/findParent.Rd man/find_neededNeighbours.Rd man/fitnessDist.Rd man/fitnessLandscape.Rd man/growthFunction.Rd man/logisticGrowth.Rd man/logisticMap.Rd man/lossSampling.Rd man/mutationFunction.Rd man/nameEnviron.Rd man/nameObject.Rd man/nameTable.Rd man/nameTable_neighbourhood.Rd man/nameTable_step.Rd man/name_batchString.Rd man/name_batchSubmit.Rd man/name_bodyScript.Rd man/name_parameterScript.Rd man/name_subScript.Rd man/querryEstablished.Rd man/reportPopulations.Rd man/resetDatabase.Rd man/reset_shapeDB.Rd man/retrieve_binaryString.Rd man/runProcessing.Rd man/runReplicate.Rd man/runSHAPE.Rd man/set_DepbySite_ancestFitness.Rd man/set_RMF_indWeight.Rd man/set_const_NK_interactionsMat.Rd man/set_const_RMF_globalOptima.Rd man/set_siteByState_fitnessMat.Rd man/shapeCombinations.Rd man/shapeExperiment.Rd man/stopError.Rd man/summariseExperiment.Rd man/summarise_evolRepeatability.Rd man/summarise_experimentFiles.Rd man/summarise_experimentParameters.Rd man/summarise_popDemographics.Rd man/trimQuotes.Rd man/updateLines.Rd man/writeParameters.Rd man/write_subScript.Rd