Man pages for JEFworks-Lab/veloviz
VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories
| asNNGraph | Function to produce idx and dist representation of a VeloViz... |
| buildVeloviz | Creates VeloViz graph and FDG layout from PC scores of... |
| graphViz | Visualize as velocity informed force directed graph |
| normalizeDepth | Normalizes counts to CPM |
| normalizeVariance | Identify overdispersed genes by normalizing counts per... |
| pancreas | Pancreas scRNA-seq data |
| plotEmbedding | Plot 2D embedding From scde/pagoda2/MUDAN |
| plotVeloviz | Plot function |
| projectedNeighbors | Computes composite distances between all cell pairs and... |
| reduceDimensions | Reduce dimension using Principal Components Analysis via... |
| vel | MERFISH velocity subset |
| veloviz | veloviz |
