Files in JMacDonaldPhD/COVID19UK
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Binary_Tree.R
COVID19UK.Rproj
DESCRIPTION
Experiments/Epidemic 1 (N = 100)/Summary Plots.png
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Summary Plots.png
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/testing_summary_densities.png
Experiments/Epidemic 1 (N = 100)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 1 (N = 100)/True_Epidemic_Curve.png
Experiments/Epidemic 1 (N = 100)/epidemic 1.R
Experiments/Epidemic 1 (N = 100)/epidemic 1.RData
Experiments/Epidemic 1 (N = 100)/parameters.txt
Experiments/Epidemic 2 (N = 100)/Notes.txt
Experiments/Epidemic 2 (N = 100)/Summary Plots.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/LikelihoodEst_under_true_param.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 2 (N = 100)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 2 (N = 100)/True_Epidemic_Curve.png
Experiments/Epidemic 2 (N = 100)/epidemic 2.R
Experiments/Epidemic 2 (N = 100)/epidemic 2.RData
Experiments/Epidemic 2 (N = 100)/parameters.txt
Experiments/Epidemic 3 (N = 200)/Summary Plots.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/parameters.txt
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Testing Scheme 1.RData
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/Testing Scheme 2.R
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/parameters.txt
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/sampled_data_tests.png
Experiments/Epidemic 3 (N = 200)/Testing Scheme 2/testing_summary_hists.png
Experiments/Epidemic 3 (N = 200)/True_Epidemic_Curve.png
Experiments/Epidemic 3 (N = 200)/epidemic 3.R
Experiments/Epidemic 3 (N = 200)/epidemic 3.RData
Experiments/Epidemic 3 (N = 200)/parameters.txt
Experiments/Epidemic 4 (N = 400)/Summary Plots.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme (asc rate prop to pop size)/Testing Scheme 1.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/parameters.txt
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Testing Scheme 1.RData
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/Testing Scheme 2.R
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/parameters.txt
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/sampled_data_tests.png
Experiments/Epidemic 4 (N = 400)/Testing Scheme 2/testing_summary_hists.png
Experiments/Epidemic 4 (N = 400)/True_Epidemic_Curve.png
Experiments/Epidemic 4 (N = 400)/epidemic 4.R
Experiments/Epidemic 4 (N = 400)/epidemic 4.RData
Experiments/Epidemic 4 (N = 400)/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Perfect Test.R
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Perfect Test.RData
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/Testing Scheme 1.RData
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Bogus Test/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Perfect Test.R
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Perfect Test.RData
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/Testing Scheme 1.RData
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Perfect Test/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/Summary Plots.png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 5 (N = 100, scaled)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 5 (N = 100, scaled)/True_Epidemic_Curve.png
Experiments/Epidemic 5 (N = 100, scaled)/epidemic 5.R
Experiments/Epidemic 5 (N = 100, scaled)/epidemic 5.RData
Experiments/Epidemic 5 (N = 100, scaled)/parameters.txt
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/parameters.txt
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Perfect Test.R
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Perfect Test.RData
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/Testing Scheme 1.RData
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/parameters.txt
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/sampled_data_tests.png
Experiments/Epidemic 6 (N = 200, scaled)/Perfect Test/testing_summary_hists.png
Experiments/Epidemic 6 (N = 200, scaled)/Summary Plots.png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 6 (N = 200, scaled)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 6 (N = 200, scaled)/True_Epidemic_Curve.png
Experiments/Epidemic 6 (N = 200, scaled)/epidemic 6.R
Experiments/Epidemic 6 (N = 200, scaled)/epidemic 6.RData
Experiments/Epidemic 6 (N = 200, scaled)/parameters.txt
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/parameters.txt
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Perfect Test.R
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Perfect Test.RData
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/Testing Scheme 1.RData
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/parameters.txt
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/sampled_data_tests.png
Experiments/Epidemic 7 (N = 400, scaled)/Perfect Test/testing_summary_hists.png
Experiments/Epidemic 7 (N = 400, scaled)/Summary Plots.png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/parameters.txt
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Testing Scheme 1.R
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/Testing Scheme 1.RData
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/parameters.txt
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/sampled_data_tests.png
Experiments/Epidemic 7 (N = 400, scaled)/Testing Scheme 1/testing_summary_hists.png
Experiments/Epidemic 7 (N = 400, scaled)/True_Epidemic_Curve.png
Experiments/Epidemic 7 (N = 400, scaled)/epidemic 7.R
Experiments/Epidemic 7 (N = 400, scaled)/epidemic 7.RData
Experiments/Epidemic 7 (N = 400, scaled)/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Summary Plots.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.05)/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/Testing Scheme 1.RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.1)/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).R
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).RData
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/parameters.txt
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/sampled_data_tests.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/testing_summary_hists.png
Experiments/Epidemic 8 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 2/Monte Carlo 2.R
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Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.15)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.2)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Bogus)/Testing Scheme (alpha = 0.25)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Testing Scheme (alpha = 0.01).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Testing Scheme (alpha = 0.01).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/Testing Scheme (alpha = 0.25).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.01)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.05)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/Testing Scheme 1.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.1)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.15)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.2)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (High Sensitivity, High Specificity)/Testing Scheme (alpha = 0.25)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/Testing Scheme (alpha = 0.05).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.05)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Testing Scheme (alpha = 0.1).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/Testing Scheme 1.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.1)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/Testing Scheme (alpha = 0.15).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.15)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/Testing Scheme (alpha = 0.2).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.2)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 2/Monte Carlo 2.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Log_Profile_Likelihood_Estimates (0-1.5).png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/Monte Carlo 1.R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/betaGrid.RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Monte Carlo 1/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/Testing Scheme (alpha = 0.25).RData
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/observation_density_over_underlying_epidemic.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Perfect)/Testing Scheme (alpha = 0.25)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Straight sims vs. Permutations)/Testing (permutations).R
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Straight sims vs. Permutations)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/Testing (Straight sims vs. Permutations)/testing_summary_hists.png
Experiments/Epidemic 9 (N = 400, scaled)/True_Epidemic_Curve.png
Experiments/Epidemic 9 (N = 400, scaled)/epidemic 9.R
Experiments/Epidemic 9 (N = 400, scaled)/epidemic 9.RData
Experiments/Epidemic 9 (N = 400, scaled)/parameters.txt
Experiments/Epidemic 9 (N = 400, scaled)/sampled_data_tests.png
Experiments/Epidemic 9 (N = 400, scaled)/testing_summary_hists.png
MCMC_trace.jpg
NAMESPACE
Progress Reports/Progress Report (23-03-21)
Progress Reports/Progress report (17-03-21).txt
R/COVID19Model.R
R/COVIDexperiment.R
R/CT_homo_SIR.R
R/Conditioned Non-Centered Household SIR.R
R/Conditioned Testing Household SIR.R
R/Data.R
R/DataDownload.R
R/DiscreteEpidemicDensity.R
R/MCMC.R
R/MarkovModel.R
R/MarkovModelLanc.R
R/MonteCarloProblem.R
R/Non-centered Household SIR.R
R/Observation Models.R
R/PM_MCMC_COVID_Likelihoods.R
R/PM_MCMCdailyHospAds.R
R/PM_MCMCdailyHospAds2.R
R/PM_MCMCdailyHospAds3.R
R/PM_MCMChospAdmissions.R
R/PM_MCMChospAdmissions2.R
R/PM_MCMChospAdmissions3.R
R/Testing Conditioned Non-centered Household SIR.R
R/TestingObservationProcess.R
R/UAkernels.R
R/altDiscreteModel_HG.R
R/cond_sim.R
R/discreteModel_HG.R
R/discreteTimeModel.R
R/discreteTimeModelLanc.R
R/fast tablulate.R
R/finalDiscreteTimeModel.R
R/hospLikelihood.R
R/householdObservationModels.R
R/householdSIR.R
R/householdSIRexperiment.R
R/importanceSampling.R
R/kernelCOVID.R
R/logLikelihood.R
R/modularMCMC.R
R/popStructGen.R
R/possiblePaths.R
R/priors.R
R/proposals.R
R/unc_sim.R
adaptMCMC_param.jpg
adaptMCMC_trace.jpg
data/EyreData24.rda
data/EyreData25.rda
data/EyreData26.rda
data/EyreData27.rda
data/EyreData28.rda
data/FF100byUA.rda
data/UACaseData_Mar21.rda
data/UACaseData_Mar23.rda
data/UAcentroids.rda
data/UAcumCases.rda
data/UAcumCases23.rda
data/UAcumCases24.rda
data/UApopn2017.rda
data/lanc_synth_pop.rda
examples/COVID19UK_example_workflow.Rmd
examples/COVID19UK_example_workflow.nb.html
examples/MonteCarloExample.R
examples/example1.Rmd
examples/example1.nb.html
finalSizes.R
man/hello.Rd
man/sape21dt12bmid20182018lalsoabroadagesestformatted.zip
quick_llh_est.jpg
testingpSim.R
wip_paper_script.R
