Man pages for JaclynSmith/qPCRr
A Set of Functions to Process and Graph qPCR Data
| addl_expt_attribute | Create a new column with additional experimental information. |
| are_colors | function to check that colors are viable |
| calc_fold_change | Calculates the fold change using deltadeltaCt |
| check_color | checkmate function to check for proper colors |
| check_ct_numeric | checkmate function to check the ct column has proper numeric... |
| check_house_gene | checkmate function to check the housekeeping gene |
| check_not_col_name | checkmate function to check that a column name is not already... |
| check_replicates | checkmate function to check for the replicates |
| check_sample_control | checkmate function to check for control condition in the... |
| check_sep | checkmate function to check for the separater |
| clean_qPCR_files_check_NTC | Read in qPCR files, clean them and report on controls |
| conc_calc | Summarize data and generate linear regression to fit... |
| linear_reg | Summarize data and generate linear regression to fit... |
| qPCR_graph | A function to graph fold change qPCR data |
| qPCRr | qPCRr: a package for cleaning, analyzing, and graphing qPCR... |
| reformat_table | reformat other data tables into one which can be used by... |
| remove_outliers | Remove outliers greater than 0.2 ct values from the... |
| reorder_samples | Order the entries in a column so that they are displayed in... |
| std_curve_file_clean | Read in qPCR files, clean them and report on controls |
| sum_tbl_calc | A function to calculate summary statistics |
