Man pages for JasonR055/Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
| arrowPlot | PCA before and after arrow plot for harman results |
| callHarman | Wrapper function to call the shared C/C++ library code |
| detachHarman | Detach the Harman package and its shared C/C++ library code |
| harman | Harman batch correction method |
| harmanresults | Harman results object |
| harmanScores | A Principal components prcomp function tweaked for Harman |
| pcaPlot | PCA plot for harman results |
| plot.harmanresults | Plot method for harman |
| prcompPlot | PCA plot |
| print.summary.harmanresults | Printing Harmanresults summaries. |
| reconstructData | Reconstruct corrected data from Harman results |
| shiftBetas | Shift beta values from 0 and 1 to avoid infinite M values |
| summary.harmanresults | Summarizing harman results. |
