Man pages for JasperHG90/sleepsimReval
Evaluation functions for my simulation study
| as.data.frame.sleepsimR_allocations | Convert allocations to data frame |
| autocorr_plot | Make autocorrelation plots of the convergence of two chains |
| average_model_SE | Compute the average model SE |
| average_model_SE_mcmc_se | Compute the MCMC SE for the average model SE |
| average_runtime | Compute the average runtime of the allocations |
| bias | Compute the parameter bias of a vector estimated parameters... |
| bias_MCMC_SE | MCMC Standard Error of the bias value |
| combine_mcmc_chains | Combine two separate chains into one chain |
| combine_posterior_chains | Combine the posterior distributions of two models into one... |
| compute_grs | Compute the Gelman-Rubin potential scale reduction factor. |
| compute_state_length | Compute the state duration for each state across three... |
| compute_tpm | Compute transition probabilities from observed data set. |
| coverage | Compute coverage |
| coverage_MCMC_SE | Coverage MCMC Standard Error |
| dens_plot | Make density plots of the convergence of two chains |
| empirical_MCMC_SE | Compute the MCMC SE |
| empirical_SE | Compute the empirical SE |
| MSE | Mean Squared Error (MSE) |
| MSE_MCMC_SE | MSE MCMC Standard Error |
| parse_sleepsimR_result | Parse a sleepsimR result file |
| postprocess_ci | Postprocess credible intervals |
| postprocess_gamma_int | Postprocess utility function for gamma_prob_bar |
| postprocess_param_est | Postprocessing utility function for parameter estimates |
| postprocess_subject_specific | Postprocess subject-specific metrics |
| PPP_mean_var | Posterior predictive check on emission means and variances. |
| PPP_tpm | Posterior predictive check on transition probabilities. |
| read_allocations_file | Read a sleepsimR allocations file |
| simulate_dataset_PPP | This is an internal function that generates a new dataset... |
| simulate_new_data | Simulate a sleep dataset used in posterior predictive checks. |
| summarize_simulation_scenario | Wrapper function that computes all simulation metrics |
| theme_thesis | Custom theme for thesis plots |
| thin_mcmc | Thin the mcmc chain |
| tpp | Make trace plots of the convergence of two chains |
