Man pages for JayAchar/hisreportr
hisreportr: Automating MSF OCA EMR reporting
| access_postgresql | Access and import PostgreSQL data |
| calculate_reporting_period | Calculate outcome reporting period |
| clean_adm_demographics | Clean admission demographic table |
| clean_cd4_vl | Clean HIV CD4 and VL data Convert HIV VL binary variable a... |
| clean_hiv_status | Clean HIV status data |
| create_rmd_table | Create table for reports |
| drug_tx_by_visit | Drug treatment by visit |
| filter_year_month | Filter by year and month |
| hisreportr | hisreportr: MSF OCA EMR reporting tools |
| int_breaks_rounded | Rount breaks to integers |
| merge_hcv_genotype | HCV genotype cleaner |
| merge_to_episode | Merge to episode |
| msf_theme | MSF-branded plot theme |
| outcome_by_followup_time | Cohort outcome by follow-up time |
| postgres_present | Postgres connection test |
| prepare_hcv_report_data | Prepare raw HCV data |
| prepare_hiv_report_data | Prepare HIV report data |
| prepare_tb_report_data | Prepare raw TB data |
| recalculate_age_tx_start | Adjust age to treatment episode |
| render_report | Render report |
| time_cohort_outcomes | Time cohort outcomes |
| write_to_postgres_tester | Upload data to test Postgres db |
