Man pages for JayAchar/tbcleanr
tbcleanr: tools for cleaning TB datade
| adhere_classr | Apply class for adherance data |
| adhere_cleanr | Clean drug adherence data |
| adhere_cleanr.default | Default method for adhere_cleanr() |
| adhere_cleanr.epiinfo | Clean drug adherence data |
| adm_classr | Add object class to identify admission database |
| adm_data_cleanr | Clean TB admission data sets |
| adm_subset | Subset adm variables |
| adm_subset.default | Default method for adm_subset() |
| adm_subset.epiinfo | Subset EpiInfo adm variables |
| adm_subset.koch6 | Subset Koch 6 adm variables |
| binary_fixer | Convert admission binary variables to factorised output |
| binary_fixer.default | Default method for binary_fixer() |
| binary_fixer.epiinfo | Convert admission binary variables to factorised output |
| binary_fixer.koch6 | Convert admission binary variables to factorised output |
| cavities_fixer | Convert admission x-ray variables to factorised output |
| cavities_fixer.default | Convert admission x-ray variables to factorised output |
| cavities_fixer.epiinfo | Convert admission x-ray variables to factorised output |
| cavities_fixer.koch6 | Convert admission x-ray variables to factorised output |
| change_cleanr | Clean drug change data |
| change_cleanr.default | Default method for change_cleanr() |
| change_cleanr.epiinfo | Clean drug change data |
| change_cleanr.koch6 | Clean drug change data |
| clean_standard_indicators | Clean Annual Standard TB Indicators |
| date_format | Detect and convert date variables |
| drug_adhere | Drug adherence |
| drug_fixer | Convert drug doses to binary output |
| drug_fixer.default | Default method for drug_fixer() |
| drug_fixer.epiinfo | Fix EpiInfo drug dosing data |
| drug_fixer.koch6 | Fix Koch 6 drug dosing data |
| dst_consolidator | Consolidate DST results |
| dst_consolidator.default | Default method for dst_consolidator() |
| dst_consolidator.epiinfo | Consolidate DST results |
| dst_consolidator.grozny | Consolidate DST results |
| extract_tb_data | Extract TB data from imported Standard Indicators object |
| gender_fixer | Factorise gender variable |
| gender_fixer.default | Default method for gender_fixer() |
| gender_fixer.epiinfo | Factorise Epiinfo gender variable |
| gender_fixer.koch6 | Factorise Koch 6 gender variable |
| get_lookup_value | Retrieve look-up value |
| hiv_fixer | Factorise HIV variable |
| hiv_fixer.default | Default method for hiv_fixer() |
| hiv_fixer.epiinfo | Factorise Epiinfo HIV variable |
| hiv_fixer.koch6 | Factorise Koch 6 HIV variable |
| id_detangle | Split admission ID number |
| id_detangle.default | Default method for id_detangle() |
| id_detangle.epiinfo | Split admission ID number |
| lab_classr | Add object class to identify lab database |
| lab_data_cleanr | Cleans laboratory data sets |
| lab_date_fixer | Aggregate dates in lab database |
| lab_date_fixer.default | Default method for lab_date_fixer() |
| lab_date_fixer.epiinfo | Aggregate dates in lab database |
| lab_date_fixer.grozny | Aggregate dates in lab database |
| lab_date_fixer.koch6 | Aggregate dates in lab database |
| lab_import_checkr | Confirm correct lab data import |
| lab_import_checkr.default | Default method for lab_import_checkr() |
| lab_import_checkr.epiinfo | Confirm correct lab data import |
| lab_import_checkr.grozny | Confirm correct lab data import |
| lab_import_checkr.koch6 | Confirm correct lab data import |
| lab_sample_fixer | Lab sample fixer |
| lab_sample_fixer.default | Default method for lab)sample_fixer() |
| lab_sample_fixer.grozny | Lab sample fixer |
| lab_subset | Subset lab variables |
| lab_subset.default | Default method for lab_subset() |
| lab_subset.epiinfo | Subset lab variables |
| lab_subset.grozny | Subset lab variables |
| lab_subset.koch6 | Subset lab variables |
| mtbdrplus_fixer | Consolidate Hain MTBDRplus results |
| mtbdrplus_fixer.default | Default method for mtbdrplus_fixer() |
| mtbdrplus_fixer.epiinfo | Consolidate Hain MTBDRplus results |
| mtbdrplus_fixer.grozny | Consolidate Hain MTBDRplus results |
| outcome_fixer | Fix TB treatment outcomes |
| outcome_fixer.default | Default method for outcome_fixer() |
| outcome_fixer.epiinfo | Fix EpiInfo treatment outcomes |
| outcome_fixer.koch6 | Fix Koch 6 treatment outcomes |
| recorded_dst | Clean recorded baseline DST variable |
| recorded_dst.default | Default method for recorded_dst() |
| recorded_dst.epiinfo | Clean recorded baseline DST variable |
| recorded_dst.koch6 | Clean recorded baseline DST variable |
| response_weight_cleanr | Treatment response weight cleanr |
| response_weight_cleanr.default | Treatment response weight cleanr |
| response_weight_cleanr.epiinfo | Treatment response weight cleanr |
| response_weight_cleanr.koch6 | Treatment response weight cleanr |
| result_consolidator | Consolidate smear and culture results |
| result_consolidator.default | Default method for result_consolidator() |
| result_consolidator.epiinfo | Consolidate smear and culture results |
| result_consolidator.grozny | Consolidate smear and culture results |
| result_consolidator.koch6 | Consolidate smear and culture results |
| tbcleanr | tbcleanr: tools for cleaning TB data |
| transpose_tb_data | Clean and transpose Standard Indicators object |
| txhistory | Clean treatment history variable |
| txhistory.default | Default method for txhistory() |
| txhistory.epiinfo | Clean treatment history variable |
| txhistory.koch6 | Clean treatment history variable |
| xpert_result_fixer | Consolidate Xpert results |
| xpert_result_fixer.default | Default method for xpert_result_fixer() |
| xpert_result_fixer.epiinfo | Consolidate Xpert results |
| xpert_result_fixer.grozny | Consolidate Xpert results |
| xpert_result_fixer.koch6 | Consolidate Xpert results |
| xpert_variable_detector | Xpert variable detector |
| yn_binary_fixer | Factorise binary (Y/N) variables |
