Man pages for JoGall/rubitrail
rubitrail, a package to analyse the output of UbiTrail, an open-source video tracking program for analysis of animal locomotion.
| calcFPS | Calculates the framerate of a time series, in frames per... |
| lensCorrection | Corrects lens distortion in raw X,Y-coordinates. |
| rubitBasic | Reads a raw UbiTrail result file and returns filtered... |
| rubitCalcActivity | Calculates the frequency and duration of mobile / stationary... |
| rubitCalcPosition | Calculate positional information (e.g. thigmotaxis,... |
| rubitCalcSpeed | Calculates speed and acceleration from processed tracking... |
| rubitCalcTurning | Resamples tracking data and calculates absolute and relative... |
| rubitLinearInterpolate | Resamples and interpolates data to achieve regular time... |
| rubitLoadFile | Reads raw data from a UbiTrail result file. |
| rubitMedianFilter | Apply a running median filter on an an area matrix. |
| rubitMetrics | A wrapper combining several functions which calculate a range... |
| rubitPlotHeatmap | Plot a 2D density estimate of all areas. |
| rubitPlotPosition | Visualise an individual trajectory and positional information... |
| rubitRemoveOutliers | Removes outliers from tracking data based upon... |
| rubitToDF | Flattens rubitrail lists into a single dataframe. |
