Man pages for JunLiuLab/SIMPLEs
SIMPLEs: single-cell RNA sequencing imputation and cell clustering methods by modeling gene module variation
| chu | Single cell RNASeq and bulk RNASeq data of human embryonic... |
| do_impute | Sampling multiple copies of imputed values and cell factors... |
| EM_impute | Monte Carlo EM algorithm for imputation and clustering |
| init_impute | Initialize imputation for each individual gene |
| init_impute_bulk | Initialize imputation for each individual gene with known... |
| selectKM | Wrapper of SIMPLE or SIMPLE-B to select optimal K and M based... |
| SIMPLE | SIMPLE: Imputing zero entries and clustering for scRNASeq... |
| SIMPLE_B | Impute zero entries and clustering for scRNASeq data... |
| ztruncnorm | Fit a zero-inflated censored normal distribution. |
