API for LTLA/RepertoireUtils
Utility Functions for Analyzing Repertoire Sequencing Data
| Global functions | |
|---|---|
| .compute_gini | Source code |
| .compute_top_prop | Source code |
| .countCellsPerClonotype | Source code |
| .countCellsPerGeneCombo | Source code |
| .countSharedClonotypes | Source code |
| .downsample_counts | Source code |
| .downsample_list | Source code |
| .downsample_matrix | Source code |
| .generate_shuffled_diversity_p | Source code |
| countCellsPerClonotype | Man page |
| countCellsPerClonotype,ANY-method | Man page |
| countCellsPerClonotype,CompressedSplitDataFrameList-method | Man page |
| countCellsPerGeneCombo | Man page |
| countCellsPerGeneCombo,ANY-method | Man page |
| countCellsPerGeneCombo,CompressedSplitDataFrameList-method | Man page |
| countSequencesPerCell | Man page Source code |
| countSharedClonotypes | Man page |
| countSharedClonotypes,ANY-method | Man page |
| countSharedClonotypes,CompressedSplitDataFrameList-method | Man page |
| createPerCellDataFrame | Man page Source code |
| permute_diversity | Source code |
| readToUmiPerCell | Man page Source code |
| splitDataFrameByCell | Man page Source code |
| summarizeClonotypeCounts | Man page Source code |
| summarizeGeneComboCounts | Man page Source code |
| summarizeSequenceStatus | Man page Source code |
| testClonotypeCountsPairwise | Man page Source code |
| testGeneComboCountsPairwise | Man page Source code |
| topCoveragePropPerCell | Man page Source code |
