Man pages for LTLA/RepertoireUtils
Utility Functions for Analyzing Repertoire Sequencing Data
| countCellsPerClonotype | Count cells per clonotype |
| countCellsPerGeneCombo | Count gene combinations |
| countSequencesPerCell | Count sequences per cell |
| countSharedClonotypes | Count shared clonotypes across groups |
| createPerCellDataFrame | Collapse to one cell per row |
| readToUmiPerCell | Read to UMI per cell |
| splitDataFrameByCell | Create a SplitDataFrameList |
| summarizeClonotypeCounts | Summarize clonotype counts |
| summarizeGeneComboCounts | Summarize gene combination counts |
| summarizeSequenceStatus | Summarize sequence status |
| testClonotypeCountsPairwise | Test for differences in clonotype diversity |
| testGeneComboCountsPairwise | Test for DE gene combinations |
| topCoveragePropPerCell | Compute the top coverage proportion per cell |
