Man pages for LTLA/batchelor
Single-Cell Batch Correction Methods
| applyMultiSCE | Apply function over multiple SingleCellExperiments |
| batchCorrect | Batch correction methods |
| BatchelorParam | BatchelorParam methods |
| batchelor-restrict | Using restriction |
| checkInputs | Check batch inputs |
| clusterMNN | Cluster-based MNN |
| convertPCsToSCE | Convert corrected PCs to a SingleCellExperiment |
| correctExperiments | Correct SingleCellExperiment objects |
| cosineNorm | Cosine normalization |
| diagnostics-cluster | Cluster-based correction diagnostics |
| divideIntoBatches | Divide into batches |
| fastMNN | Fast mutual nearest neighbors correction |
| intersectRows | Take the intersection of rows across batches |
| mnnCorrect | Mutual nearest neighbors correction |
| mnnDeltaVariance | Computes the variance of the paired MNN deltas |
| multiBatchNorm | Per-batch scaling normalization |
| multiBatchPCA | Multi-batch PCA |
| noCorrect | No correction |
| quickCorrect | Quickly perform batch correction |
| reducedMNN | MNN correction in reduced dimensions |
| reexports | Objects exported from other packages |
| regressBatches | Regress out batch effects |
| rescaleBatches | Scale counts across batches |
