Man pages for LabNeuroCogDevel/LNCDR
Laboratory of Neuro-Cognitive Development R Functions
| afni.color_at_value | the hex color value of any point on the spectrum read from... |
| afni_save_spectrum | wrapper for optionally creating a pdf of... |
| afni.spectrum | AFNI color spectrum -> R object |
| age_animate | age_animate |
| age_animate_weight | age_animate_weight |
| col_ungroup | col_ungroup: pull unique bits out of redudant column names to... |
| combatwrap | haromize: wrap around neuroCombat |
| date_match | match dates in a data frame by one-to-many merge and rank.... |
| db_query | db_qeury - query database |
| find_covars_gam | find_covars_gam |
| gam_growthrate | gam_growthrate |
| gam_growthrate_plot | plot gam factor with deriv |
| gam_growthrate_plot_combine | combine age plot and tile slop heatmap into one figure... |
| gam_maturation_point | gam_maturation_point |
| hera | Build OS (windows or unix) agnostic mount path to hera data... |
| ICCforlongformat | ICClong |
| ijk.afni2oro | ijk.afni2oro: given afni gui voxel dims, get MNI (LPI) dims... |
| ijk.oro2afni | ijk.oro2afni: given index of oro nifti @.Data matrix, get... |
| interactive_label_match | interactive_label_match: match labels from one string vector... |
| ld8_age | ld8_age - merge input dataframe with ages calc from db |
| ld8from | Extract lunaid_date from text |
| lmer_extract | lmer_extract get (t, chisq, p) values from a single variable... |
| lm_list | lm_list |
| lm_list_pval | lm_list_pval |
| lm_pval | lm_pval |
| lncd_pgconn | lncd_pgconn - create connection to lncd postgres database |
| lunaize | Re-theme plot a la Luna This function stylizes a ggplot2 plot... |
| mask_nii | mask_nii: mask a nii by a mask, returns num matrix w/ rows of... |
| motion_eangle | mean Euler Angle see... |
| motion_nfdabove | number fd > treshold (def .1mm) |
| motion_readfd | extract FD from fd file |
| motion_readpar | extract motion paramiters ordered like mcflirt |
| motion_rms | root mean square |
| nii_range | NIFTI range using afni's 3dBrickStat |
| parseROItempcor | parseROItempcor - read adj_pearson.txt and... |
| plot_colorspectrum | plot a color spectrum read in by afni.spectrum |
| pubmed_search | Pubmed search into a dataframe |
| qassert_all | Check single rule against all or enumerated variables |
| qassertm | Quick checks for multiple variable=rule enumerated as... |
| qualtrics_auth | authenticate with qualtrics using api token in config file |
| qualtrics_battery_names | separate survey names into |
| qualtrics_labels | extract label from each column of a dataframe |
| qualtrics_surveys | pull surveys matching a pattern into a list of dataframes |
| read_mask | read_mask: read a nifti file as a mask, return "logi"... |
| retentionadjustvisits | retentionadjustvisits |
| roicormat_wide | roicormat_wide - extract upper tri as single vector. name... |
| save1D | Create .1D files froma data frame * works on a dataframe with... |
| sim_multilevel_bivariatenormal_randintercept | sim_multilevel_bivariatenormal_randintercept |
| sim_multilevel_bivariatenormal_randinterceptandslope | sim_multilevel_bivariatenormal_randinterceptandslope |
| task_query | task_query - return all rows for a given task from psql... |
| tick_seq | generate a sequence and minor/major tick labs for a ggplot... |
| to_nii | to_nii: give a mask and a dataframe (row per voxel: i j k... |
| unnestjson | unnest json(b) object |
| uppsp_scoring | Author: BTC upps_scoring - scores uppsp 59-item version *... |
| vox_cor | vox_cor: voxelwise correlation of 4d nifti from seed roi to... |
| waterfall_group | waterfall plot data |
| waterfall_plot | waterfall plot |
| winsorize_sd | winsozrize_sd - set above/below devation range to range... |
| xlsx_date | number to date for vector/column from excel sheet with mixed... |
| zscore | zscore: (vector - mean)/sd |
| zscorecols | zscores all columns in a df except those whose names are... |
| zscorewithinfactor | zscores within factor for long format/nested data |
