Files in Legana/ampir
Predict Antimicrobial Peptides
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/aaseq_is_valid.R
R/calc_amphiphilicity.R
R/calc_hydrophobicity.R
R/calc_mw.R
R/calc_net_charge.R
R/calc_pI.R
R/calc_pseudo_comp.R
R/calculate_features.R
R/chunk_rows.R
R/cpp_functions.R
R/df_to_faa.R
R/predict_amps.R
R/read_faa.R
R/remove_nonstandard_aa.R
R/remove_stop_codon.R
R/sysdata.rda
README.Rmd
README.md
ampir.Rproj
cran-comments.md
data-raw/AAidx.rds
data-raw/create_model.R
data-raw/create_regression_test_data.R
data-raw/download.sh
inst/extdata/bat_negative.fasta.gz
inst/extdata/bat_positive.fasta.gz
inst/extdata/bat_protein.fasta
inst/extdata/little_test.fasta
inst/extdata/my_protein_df.rds
inst/extdata/my_protein_pred.rds
inst/extdata/non_standard_df.rds
inst/logo/ampir_hex.png
man/aaseq_is_valid.Rd
man/calc_amphiphilicity.Rd
man/calc_hydrophobicity.Rd
man/calc_mw.Rd
man/calc_net_charge.Rd
man/calc_pI.Rd
man/calc_pseudo_comp.Rd
man/calculate_features.Rd
man/chunk_rows.Rd
man/df_to_faa.Rd
man/predict_amps.Rd
man/read_faa.Rd
man/remove_nonstandard_aa.Rd
man/remove_stop_codon.Rd
src/.gitignore
src/RcppExports.cpp
src/rcpp_paac.cpp
tests/testdata/hepcidin_paac.rds
tests/testdata/hepcidin_paac_lambda4.rds
tests/testdata/xbench.rds
tests/testthat.R
tests/testthat/test-calc-pseudo-comp.R
tests/testthat/test-calculate-features.R
tests/testthat/test-chunk-rows.R
tests/testthat/test-df_to_faa.R
tests/testthat/test-predict-amps.R
tests/testthat/test-read-faa.R
tests/testthat/test-removenonstandardaa.R
vignettes/.gitignore
vignettes/ampir.Rmd
vignettes/train_model.Rmd
