Files in LieberInstitute/GenomicState
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/feature_request_template.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/GenomicState-package.R
R/GenomicStateHub.R
R/gencode_annotated_genes.R
R/gencode_genomic_state.R
R/gencode_txdb.R
R/local_metadata.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/.build_gencode_human_hg19.sh
data-raw/.build_gencode_human_hg38.sh
data-raw/.gitignore
data-raw/build_gencode_human.R
data-raw/build_gencode_human.sh
data-raw/logs/build_gencode_human_hg19.23.txt
data-raw/logs/build_gencode_human_hg19.24.txt
data-raw/logs/build_gencode_human_hg19.25.txt
data-raw/logs/build_gencode_human_hg19.26.txt
data-raw/logs/build_gencode_human_hg19.27.txt
data-raw/logs/build_gencode_human_hg19.28.txt
data-raw/logs/build_gencode_human_hg19.29.txt
data-raw/logs/build_gencode_human_hg19.30.txt
data-raw/logs/build_gencode_human_hg19.31.txt
data-raw/logs/build_gencode_human_hg19.32.txt
data-raw/logs/build_gencode_human_hg38.23.txt
data-raw/logs/build_gencode_human_hg38.24.txt
data-raw/logs/build_gencode_human_hg38.25.txt
data-raw/logs/build_gencode_human_hg38.26.txt
data-raw/logs/build_gencode_human_hg38.27.txt
data-raw/logs/build_gencode_human_hg38.28.txt
data-raw/logs/build_gencode_human_hg38.29.txt
data-raw/logs/build_gencode_human_hg38.30.txt
data-raw/logs/build_gencode_human_hg38.31.txt
data-raw/logs/build_gencode_human_hg38.32.txt
data-raw/txdb_v31_hg19_chr21.R
dev/01_create_pkg.R
dev/02_git_github_setup.R
dev/03_core_files.R
dev/04_update.R
inst/CITATION
inst/extdata/metadata_gencode_human.csv
inst/extdata/txdb_v31_hg19_chr21.sqlite
inst/scripts/generate_make_data_gencode_human.R
inst/scripts/make-data_gencode_human.R
inst/scripts/make-metadata_gencode_human.R
man/GenomicState-package.Rd
man/GenomicStateHub.Rd
man/gencode_annotated_genes.Rd
man/gencode_genomic_state.Rd
man/gencode_txdb.Rd
man/local_metadata.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-gencode.R
vignettes/.gitignore
vignettes/GenomicState.Rmd
