| extract_ROI | extract ROI |
| filter_Tukey | filter TuckeyHSD output |
| mp_ROI | sum |
| plot_snp_density | function to plot variants over chromosome |
| plot_snp_genome | function to plot ROI and annotation over genome |
| process | filters mp_ROI for repeats |
| return_sums | sum |
| stat_by_variants | function to test for significant bins |
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