Files in LynetteGao/Limno_DataScience
Simplified oxygen model
.DS_Store
.Rbuildignore
.gitignore
1sttime_run_calo2.Rprofvis
DESCRIPTION
Limno_DataScience.Rproj
NAMESPACE
R/helper.R
README.md
after1&2_running_calo2.Rprofvis
after3_running_one_lake.Rprofvis
eval.csv
eval_test.csv
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/120018046_(White_Bear)/.DS_Store
inst/extdata/120018046_(White_Bear)/.gitkeep
inst/extdata/120018046_(White_Bear)/NLDAS_time[0.359420]_x[256]_y[160].csv
inst/extdata/120018046_(White_Bear)/White_Bear_4.5_alldata.txt
inst/extdata/120018046_(White_Bear)/White_Bear_4.5_oxymodel.txt
inst/extdata/120018046_(White_Bear)/nhdhr_120018046.nml
inst/extdata/120018046_(White_Bear)/oxymodel.png
inst/extdata/120018046_(White_Bear)/oxymodel.txt
inst/extdata/120018046_(White_Bear)/pb0_nhdhr_120018046_ice_flag.csv
inst/extdata/120018046_(White_Bear)/pb0_nhdhr_120018046_temperatures.csv
inst/extdata/120018046_(White_Bear)/wq_data_White_Bear.csv
inst/extdata/120018084_(McCarrons)/.gitkeep
inst/extdata/120018084_(McCarrons)/NLDAS_time[0.359420]_x[255]_y[159].csv
inst/extdata/120018084_(McCarrons)/nhdhr_120018084.nml
inst/extdata/120018084_(McCarrons)/oxymodel.png
inst/extdata/120018084_(McCarrons)/oxymodel.txt
inst/extdata/120018084_(McCarrons)/pb0_nhdhr_120018084_ice_flag.csv
inst/extdata/120018084_(McCarrons)/pb0_nhdhr_120018084_temperatures.csv
inst/extdata/120018084_(McCarrons)/wq_data_McCarrons.csv
inst/extdata/120018100_(Bde_Maka_Ska)/.gitkeep
inst/extdata/120018100_(Bde_Maka_Ska)/NLDAS_time[0.359420]_x[253]_y[159].csv
inst/extdata/120018100_(Bde_Maka_Ska)/nhdhr_120018100.nml
inst/extdata/120018100_(Bde_Maka_Ska)/oxymodel.png
inst/extdata/120018100_(Bde_Maka_Ska)/oxymodel.txt
inst/extdata/120018100_(Bde_Maka_Ska)/pb0_nhdhr_120018100_ice_flag.csv
inst/extdata/120018100_(Bde_Maka_Ska)/pb0_nhdhr_120018100_temperatures.csv
inst/extdata/120018100_(Bde_Maka_Ska)/wq_data_Bde_Maka_Ska.csv
inst/extdata/120018114_(Minnetonka)/.gitkeep
inst/extdata/120018114_(Minnetonka)/NLDAS_time[0.359420]_x[251]_y[159].csv
inst/extdata/120018114_(Minnetonka)/nhdhr_120018114.nml
inst/extdata/120018114_(Minnetonka)/oxymodel.png
inst/extdata/120018114_(Minnetonka)/oxymodel.txt
inst/extdata/120018114_(Minnetonka)/pb0_nhdhr_120018114_ice_flag.csv
inst/extdata/120018114_(Minnetonka)/pb0_nhdhr_120018114_temperatures.csv
inst/extdata/120018114_(Minnetonka)/wq_data_Minnetonka.csv
inst/extdata/120019354_(Rainy)/.gitkeep
inst/extdata/120019354_(Rainy)/NLDAS_time[0.359420]_x[255]_y[188].csv
inst/extdata/120019354_(Rainy)/nhdhr_120019354.nml
inst/extdata/120019354_(Rainy)/oxymodel.png
inst/extdata/120019354_(Rainy)/oxymodel.txt
inst/extdata/120019354_(Rainy)/pb0_nhdhr_120019354_ice_flag.csv
inst/extdata/120019354_(Rainy)/pb0_nhdhr_120019354_temperatures.csv
inst/extdata/120019354_(Rainy)/wq_data_Rainy.csv
inst/extdata/120019850_(Marie)/.gitkeep
inst/extdata/120019850_(Marie)/NLDAS_time[0.359420]_x[246]_y[162].csv
inst/extdata/120019850_(Marie)/nhdhr_120019850.nml
inst/extdata/120019850_(Marie)/oxymodel.png
inst/extdata/120019850_(Marie)/oxymodel.txt
inst/extdata/120019850_(Marie)/pb0_nhdhr_120019850_ice_flag.csv
inst/extdata/120019850_(Marie)/pb0_nhdhr_120019850_temperatures.csv
inst/extdata/120019850_(Marie)/wq_data_Marie.csv
inst/extdata/120019854_(Clearwater)/.gitkeep
inst/extdata/120019854_(Clearwater)/NLDAS_time[0.359420]_x[247]_y[162].csv
inst/extdata/120019854_(Clearwater)/nhdhr_120019854.nml
inst/extdata/120019854_(Clearwater)/oxymodel.png
inst/extdata/120019854_(Clearwater)/oxymodel.txt
inst/extdata/120019854_(Clearwater)/pb0_nhdhr_120019854_ice_flag.csv
inst/extdata/120019854_(Clearwater)/pb0_nhdhr_120019854_temperatures.csv
inst/extdata/120019854_(Clearwater)/wq_data_Clearwater.csv
inst/extdata/141288680_(Fish)/.gitkeep
inst/extdata/141288680_(Fish)/NLDAS_time[0.359420]_x[282]_y[146].csv
inst/extdata/141288680_(Fish)/nhdhr_141288680.nml
inst/extdata/141288680_(Fish)/pb0_nhdhr_141288680_ice_flag.csv
inst/extdata/141288680_(Fish)/pb0_nhdhr_141288680_temperatures.csv
inst/extdata/141288680_(Fish)/pball_nhdhr_141288680_ice_flag.csv
inst/extdata/141288680_(Fish)/pball_nhdhr_141288680_temperatures.csv
inst/extdata/141288680_(Fish)/wq_data_Fish.csv
inst/extdata/143249470_(Mendota)/.gitkeep
inst/extdata/143249470_(Mendota)/NLDAS_time[0.359420]_x[284]_y[144].csv
inst/extdata/143249470_(Mendota)/nhdhr_143249470.nml
inst/extdata/143249470_(Mendota)/pb0_nhdhr_143249470_ice_flag.csv
inst/extdata/143249470_(Mendota)/pb0_nhdhr_143249470_temperatures.csv
inst/extdata/143249470_(Mendota)/pball_nhdhr_143249470_ice_flag.csv
inst/extdata/143249470_(Mendota)/pball_nhdhr_143249470_temperatures.csv
inst/extdata/143249470_(Mendota)/wq_data_Mendota.csv
inst/extdata/143249640_(Monona)/.gitkeep
inst/extdata/143249640_(Monona)/NLDAS_time[0.359420]_x[285]_y[144].csv
inst/extdata/143249640_(Monona)/nhdhr_143249640.nml
inst/extdata/143249640_(Monona)/pb0_nhdhr_143249640_ice_flag.csv
inst/extdata/143249640_(Monona)/pb0_nhdhr_143249640_temperatures.csv
inst/extdata/143249640_(Monona)/pball_nhdhr_143249640_ice_flag.csv
inst/extdata/143249640_(Monona)/pball_nhdhr_143249640_temperatures.csv
inst/extdata/143249640_(Monona)/wq_data_Monona.csv
inst/extdata/143249705_(Wingra)/.gitkeep
inst/extdata/143249705_(Wingra)/NLDAS_time[0.359420]_x[284]_y[144].csv
inst/extdata/143249705_(Wingra)/nhdhr_143249705.nml
inst/extdata/143249705_(Wingra)/pb0_nhdhr_143249705_ice_flag.csv
inst/extdata/143249705_(Wingra)/pb0_nhdhr_143249705_temperatures.csv
inst/extdata/143249705_(Wingra)/pball_nhdhr_143249705_ice_flag.csv
inst/extdata/143249705_(Wingra)/pball_nhdhr_143249705_temperatures.csv
inst/extdata/143249705_(Wingra)/wq_data_Wingra.csv
inst/extdata/34131552_(Harriet)/.gitkeep
inst/extdata/34131552_(Harriet)/NLDAS_time[0.359420]_x[253]_y[159].csv
inst/extdata/34131552_(Harriet)/nhdhr_34131552.nml
inst/extdata/34131552_(Harriet)/oxymodel.png
inst/extdata/34131552_(Harriet)/oxymodel.txt
inst/extdata/34131552_(Harriet)/pb0_nhdhr_34131552_ice_flag.csv
inst/extdata/34131552_(Harriet)/pb0_nhdhr_34131552_temperatures.csv
inst/extdata/34131552_(Harriet)/wq_data_Harriet.csv
inst/extdata/69886156_(Allequash)/.gitkeep
inst/extdata/69886156_(Allequash)/NLDAS_time[0.359420]_x[282]_y[168].csv
inst/extdata/69886156_(Allequash)/nhdhr_69886156.nml
inst/extdata/69886156_(Allequash)/pb0_nhdhr_69886156_ice_flag.csv
inst/extdata/69886156_(Allequash)/pb0_nhdhr_69886156_temperatures.csv
inst/extdata/69886156_(Allequash)/pball_nhdhr_69886156_ice_flag.csv
inst/extdata/69886156_(Allequash)/pball_nhdhr_69886156_temperatures.csv
inst/extdata/69886156_(Allequash)/wq_data_Allequash.csv
inst/extdata/69886228_(Trout)/.gitkeep
inst/extdata/69886228_(Trout)/NLDAS_time[0.359420]_x[282]_y[168].csv
inst/extdata/69886228_(Trout)/nhdhr_69886228.nml
inst/extdata/69886228_(Trout)/pb0_nhdhr_69886228_ice_flag.csv
inst/extdata/69886228_(Trout)/pb0_nhdhr_69886228_temperatures.csv
inst/extdata/69886228_(Trout)/pball_nhdhr_69886228_ice_flag.csv
inst/extdata/69886228_(Trout)/pball_nhdhr_69886228_temperatures.csv
inst/extdata/69886228_(Trout)/wq_data_Trout.csv
inst/extdata/69886284_(Big_Muskellunge)/.gitkeep
inst/extdata/69886284_(Big_Muskellunge)/NLDAS_time[0.359420]_x[283]_y[168].csv
inst/extdata/69886284_(Big_Muskellunge)/nhdhr_69886284.nml
inst/extdata/69886284_(Big_Muskellunge)/pb0_nhdhr_69886284_ice_flag.csv
inst/extdata/69886284_(Big_Muskellunge)/pb0_nhdhr_69886284_temperatures.csv
inst/extdata/69886284_(Big_Muskellunge)/pball_nhdhr_69886284_ice_flag.csv
inst/extdata/69886284_(Big_Muskellunge)/pball_nhdhr_69886284_temperatures.csv
inst/extdata/69886284_(Big_Muskellunge)/wq_data_Big_Muskelluge.csv
inst/extdata/69886444_(Sparkling)/.gitkeep
inst/extdata/69886444_(Sparkling)/NLDAS_time[0.359420]_x[282]_y[168].csv
inst/extdata/69886444_(Sparkling)/nhdhr_69886444.nml
inst/extdata/69886444_(Sparkling)/pb0_nhdhr_69886444_ice_flag.csv
inst/extdata/69886444_(Sparkling)/pb0_nhdhr_69886444_temperatures.csv
inst/extdata/69886444_(Sparkling)/pball_nhdhr_69886444_ice_flag.csv
inst/extdata/69886444_(Sparkling)/pball_nhdhr_69886444_temperatures.csv
inst/extdata/69886444_(Sparkling)/wq_data_Sparkling.csv
inst/extdata/69886510_(Crystal)/.gitkeep
inst/extdata/69886510_(Crystal)/NLDAS_time[0.359420]_x[283]_y[168].csv
inst/extdata/69886510_(Crystal)/nhdhr_69886510.nml
inst/extdata/69886510_(Crystal)/pb0_nhdhr_69886510_ice_flag.csv
inst/extdata/69886510_(Crystal)/pb0_nhdhr_69886510_temperatures.csv
inst/extdata/69886510_(Crystal)/pball_nhdhr_69886510_ice_flag.csv
inst/extdata/69886510_(Crystal)/pball_nhdhr_69886510_temperatures.csv
inst/extdata/69886510_(Crystal)/wq_data_Crystal.csv
inst/extdata/74926457_(Lac_Court_Oreilles)/.gitkeep
inst/extdata/74926457_(Lac_Court_Oreilles)/NLDAS_time[0.359420]_x[268]_y[167].csv
inst/extdata/74926457_(Lac_Court_Oreilles)/nhdhr_74926457.nml
inst/extdata/74926457_(Lac_Court_Oreilles)/oxymodel.png
inst/extdata/74926457_(Lac_Court_Oreilles)/oxymodel.txt
inst/extdata/74926457_(Lac_Court_Oreilles)/pb0_nhdhr_74926457_ice_flag.csv
inst/extdata/74926457_(Lac_Court_Oreilles)/pb0_nhdhr_74926457_temperatures.csv
inst/extdata/74926457_(Lac_Court_Oreilles)/wq_data_Lac_Court_Oreilles.csv
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/.gitkeep
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/NLDAS_time[0.359420]_x[261]_y[155].csv
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/nhdhr_adfdf197-9f62-4650-8866-676709b89aee.nml
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/oxymodel.png
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/oxymodel.txt
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/pb0_nhdhr_adfdf197-9f62-4650-8866-676709b89aee_ice_flag.csv
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/pb0_nhdhr_adfdf197-9f62-4650-8866-676709b89aee_temperatures.csv
inst/extdata/adfdf197-9f62-4650-8866-676709b89aee_(Pepin)/wq_data_Pepin.csv
inst/extdata/study_lakes.dbf
inst/extdata/study_lakes.shp
inst/extdata/study_lakes.shx
lakes_location.png
man/calc_dens.Rd
man/calc_do.Rd
man/calc_epil_hypo_temp.Rd
man/calc_epil_hypo_vol.Rd
man/calc_fit.Rd
man/calc_rmse.Rd
man/calc_rmse_epil.Rd
man/calc_rmse_hypo.Rd
man/calc_td_depth.Rd
man/calc_total_vol.Rd
man/compare_predict_versus_observed.Rd
man/extract_time_space.Rd
man/input.Rd
man/optim_do.Rd
man/preprocess_obs.Rd
man/valid.Rd
oxyModel.R
