FUTURE: Unified Parallel and Distributed Processing in R for Everyone

adept

Version: 1.1.2
GitHub: https://github.com/martakarass/adept
Source code: https://github.com/cran/adept
Date/Publication: 2019-06-18 06:50:03 UTC
Number of recursive dependencies: 97

Run revdep_details(, "adept") for more info

checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: doc 4.7Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tibble’ All declared Imports should be used.

alookr

Version: 0.3.2
GitHub: https://github.com/choonghyunryu/alookr
Source code: https://github.com/cran/alookr
Date/Publication: 2020-06-07 16:50:07 UTC
Number of recursive dependencies: 207

Run revdep_details(, "alookr") for more info

checking whether package ‘alookr’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/alookr/new/alookr.Rcheck/00install.out’ for details.

AlpsNMR

Version: 3.0.3
GitHub: NA
Source code: https://github.com/cran/AlpsNMR
Date/Publication: 2020-11-04
Number of recursive dependencies: 164

Run revdep_details(, "AlpsNMR") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘zip’ All declared Imports should be used.

aroma.core

Version: 3.2.1
GitHub: https://github.com/HenrikBengtsson/aroma.core
Source code: https://github.com/cran/aroma.core
Date/Publication: 2020-02-04 15:20:21 UTC
Number of recursive dependencies: 47

Run revdep_details(, "aroma.core") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

BAMBI

Version: 2.3.0
GitHub: https://github.com/c7rishi/BAMBI
Source code: https://github.com/cran/BAMBI
Date/Publication: 2020-06-19 13:50:07 UTC
Number of recursive dependencies: 49

Run revdep_details(, "BAMBI") for more info

checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 5.6Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats4’ All declared Imports should be used.

batchtools

Version: 0.9.14
GitHub: https://github.com/mllg/batchtools
Source code: https://github.com/cran/batchtools
Date/Publication: 2020-10-21 20:50:03 UTC
Number of recursive dependencies: 79

Run revdep_details(, "batchtools") for more info

checking dependencies in R code ... NOTE ``` -------------------------------------------------------------------------- [[2884,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces:

Module: OpenFabrics (openib) Host: c4-dev2

Another transport will be used instead, although this may result in lower performance.

```

bcmaps

Version: 0.18.1
GitHub: https://github.com/bcgov/bcmaps
Source code: https://github.com/cran/bcmaps
Date/Publication: 2020-04-29 10:30:10 UTC
Number of recursive dependencies: 88

Run revdep_details(, "bcmaps") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘bcmapsdata’

biotmle

Version: 1.14.0
GitHub: https://github.com/nhejazi/biotmle
Source code: https://github.com/cran/biotmle
Date/Publication: 2020-10-27
Number of recursive dependencies: 163

Run revdep_details(, "biotmle") for more info

checking examples ... ERROR ``` ...
- DataFrame()
  
  benz_idx <- which(names(colData(illuminaData)) %in% "benzene")
  
  biomarkerTMLEout <- biomarkertmle(
- se = illuminaData[1:2, ],
- varInt = benz_idx,
- parallel = FALSE,
- g_lib = c("SL.mean", "SL.glm"),
- Q_lib = c("SL.bayesglm", "SL.glm")
- ) Warning: The x argument of as_tibble.matrix() must have unique column names if .name_repair is omitted as of tibble 2.0.0. Using compatibility .name_repair. This warning is displayed once every 8 hours. Call lifecycle::last_warnings() to see where this warning was generated. Note: Sequential evaluation over many probes may take a long time. Timing stopped at: 0.002 0.001 0.003 Warning in value[3L] : NAs introduced by coercion Error in updt[[as.integer(i)]] <- .error(msg) : attempt to select more than one element in integerOneIndex Calls: biomarkertmle ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted ```
checking tests ... ``` ... █
1. └─biotmle::biomarkertmle(...) test-modtest_ic.R:15:0
2. ├─BiocParallel::bplapply(...)
3. └─BiocParallel::bplapply(...)
4. ├─BiocParallel::bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM)
5. └─BiocParallel::bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM)
6. └─base::tryCatch(...)
7. └─base:::tryCatchList(expr, classes, parentenv, handlers)
8. └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. └─value[3L]
══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-biomarkertmle.R:15:1): (code run outside of test_that()) Warning (test-biomarkertmle.R:15:1): (code run outside of test_that()) ERROR (test-biomarkertmle.R:15:1): (code run outside of test_that()) Warning (test-modtest_ic.R:15:1): (code run outside of test_that()) ERROR (test-modtest_ic.R:15:1): (code run outside of test_that())

[ FAIL 2 | WARN 3 | SKIP 0 | PASS 5 ] Error: Test failures Execution halted ```

blavaan

Version: 0.3-10
GitHub: NA
Source code: https://github.com/cran/blavaan
Date/Publication: 2020-08-03 06:40:02 UTC
Number of recursive dependencies: 114

Run revdep_details(, "blavaan") for more info

checking tests ... ``` ... 5. └─blavaan:::fitMeasures(fitjags) 6. └─blavaan:::.local(object, fit.measures, baseline.model, ...) 7. └─blavaan:::blav_fit_measures(...) 8. └─blavaan:::case_lls(...) 9. ├─base::t(do.call("future_sapply", loop.args))
1. ├─base::do.call("future_sapply", loop.args)
2. └─future.apply::future_sapply(...)
3. └─future.apply::future_lapply(X = X, FUN = FUN, ..., future.label = future.label)
4. └─future.apply:::future_xapply(...)
5. └─future.apply:::getGlobalsAndPackagesXApply(...)
6. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
7. ├─base::system.time(...)
8. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ Warning (???): blavaan arguments ERROR (tests.blavaanobject-methods.R:31:5): blavaan object methods work

[ FAIL 1 | WARN 1 | SKIP 0 | PASS 32 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 62.7Mb sub-directories of 1Mb or more: libs 60.8Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blockCV

Version: 2.1.1
GitHub: https://github.com/rvalavi/blockCV
Source code: https://github.com/cran/blockCV
Date/Publication: 2020-02-23 20:00:02 UTC
Number of recursive dependencies: 110

Run revdep_details(, "blockCV") for more info

checking tests ... ``` ... train test 1 211 43 2 207 47 3 173 81 4 209 45 5 216 38 ── Skip (testSpatialBlock.R:293:3): test spatialBlock failur: wrong user-defined Reason: On CRAN

── Skip (testSpatialBlock.R:307:3): test spatialBlock with no smaller mask raste Reason: On CRAN

── Skipped tests ────────────────────────────────────────────────────────────── ● On CRAN (8)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (testSpatialAutoRange.R:19:3): test spatialAutoRange function with multi-layer raster in parallel

[ FAIL 1 | WARN 0 | SKIP 8 | PASS 193 ] Error: Test failures Execution halted ```
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘biomod2’

brms

Version: 2.14.4
GitHub: https://github.com/paul-buerkner/brms
Source code: https://github.com/cran/brms
Date/Publication: 2020-11-03 06:40:22 UTC
Number of recursive dependencies: 210

Run revdep_details(, "brms") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 6.6Mb sub-directories of 1Mb or more: R 3.0Mb doc 2.7Mb

CLVTools

Version: 0.7.0
GitHub: https://github.com/bachmannpatrick/CLVTools
Source code: https://github.com/cran/CLVTools
Date/Publication: 2020-08-26 20:10:02 UTC
Number of recursive dependencies: 87

Run revdep_details(, "CLVTools") for more info

checking installed package size ... NOTE installed size is 12.5Mb sub-directories of 1Mb or more: libs 11.4Mb

codebook

Version: 0.9.2
GitHub: https://github.com/rubenarslan/codebook
Source code: https://github.com/cran/codebook
Date/Publication: 2020-06-06 23:40:03 UTC
Number of recursive dependencies: 198

Run revdep_details(, "codebook") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘graphics’ ‘jsonlite’ ‘rlang’ ‘tidyselect’ ‘vctrs’ All declared Imports should be used.
checking data for non-ASCII characters ... NOTE Note: found 65 marked UTF-8 strings

crossmap

Version: 0.2.0
GitHub: https://github.com/rossellhayes/crossmap
Source code: https://github.com/cran/crossmap
Date/Publication: 2020-09-24 07:30:02 UTC
Number of recursive dependencies: 60

Run revdep_details(, "crossmap") for more info

checking tests ... ``` ... 8. └─future::ClusterFuture(...) 9. └─future::getGlobalsAndPackages(...)
1. ├─base::system.time(...)
2. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-future_xmap.R:18:5): multisession - equivalence with xmap() ERROR (test-future_xmap.R:18:5): multisession - equivalence with xmap() ERROR (test-future_xmap.R:28:5): multisession - equivalence with vector xmap()s ERROR (test-future_xmap.R:53:5): multisession - equivalence with df xmap()s ERROR (test-future_xmap.R:69:5): multisession - equivalence with map_vec() ERROR (test-future_xmap.R:153:5): multisession - equivalence with xmap_mat() ERROR (test-future_xmap.R:193:5): multisession - named arguments can be passed through ERROR (test-future_xmap.R:209:5): multisession - arguments can be matched by name ERROR (test-future_xmap.R:222:5): multisession - unused components can be absorbed ERROR (test-future_xmap.R:239:5): multisession - Globals in .l are found (.l could be a fn) ERROR (test-future_xmap.R:260:7): multisession - Globals in .l are only exported to workers that use them

[ FAIL 10 | WARN 1 | SKIP 0 | PASS 204 ] Error: Test failures Execution halted ```

cSEM

Version: 0.3.0
GitHub: https://github.com/M-E-Rademaker/cSEM
Source code: https://github.com/cran/cSEM
Date/Publication: 2020-10-12 16:40:03 UTC
Number of recursive dependencies: 121

Run revdep_details(, "cSEM") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rdpack’ All declared Imports should be used.

datapackage.r

Version: 1.3.1
GitHub: https://github.com/frictionlessdata/datapackage-r
Source code: https://github.com/cran/datapackage.r
Date/Publication: 2020-05-06 22:10:09 UTC
Number of recursive dependencies: 114

Run revdep_details(, "datapackage.r") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘iterators’ ‘readr’ All declared Imports should be used.

delayed

Version: 0.3.0
GitHub: https://github.com/tlverse/delayed
Source code: https://github.com/cran/delayed
Date/Publication: 2020-02-28 11:40:02 UTC
Number of recursive dependencies: 74

Run revdep_details(, "delayed") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘assertthat’ All declared Imports should be used.

dhReg

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/dhReg
Date/Publication: 2019-12-13 14:00:02 UTC
Number of recursive dependencies: 71

Run revdep_details(, "dhReg") for more info

checking tests ... ``` ...
1. future::plan(multiprocess)
2. future:::plan_set(...)
3. future:::warn_about_multiprocess(newStack)
4. base::.Deprecated(...)
── ERROR (???): summary of Dynamic harmonic regression model ─────────────────── Error: Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression Backtrace: 1. dhReg::dhr(...) 2. future.apply::future_sapply(...) 3. future.apply::future_lapply(X = X, FUN = FUN, ..., future.label = future.label) 4. future.apply:::future_xapply(...) 5. future.apply:::getGlobalsAndPackagesXApply(...) 6. future::getGlobalsAndPackages(expr, envir = envir, globals = globals) 8. future:::assert_no_references(globals, action = action)

M <- dhr(Data=Data_ts,XREG=NULL,Range=list(1:2,1),Frequency=c(24,168),Criteria="aicc") Error: Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression Timing stopped at: 0.041 0.002 0.043 Execution halted ```

disk.frame

Version: 0.3.7
GitHub: https://github.com/xiaodaigh/disk.frame
Source code: https://github.com/cran/disk.frame
Date/Publication: 2020-07-07 13:10:03 UTC
Number of recursive dependencies: 110

Run revdep_details(, "disk.frame") for more info

checking examples ... ERROR ``` Running examples in ‘disk.frame-Ex.R’ failed The error most likely occurred in:

Name: cmap2

Title: 'cmap2' a function to two disk.frames

Aliases: cmap2 map2 map_by_chunk_id

** Examples

cars.df = as.disk.frame(cars)

cars2.df = cmap2(cars.df, cars.df, ~data.table::rbindlist(list(.x, .y))) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.001 0.001 0.002 Execution halted ```

doFuture

Version: 0.10.0
GitHub: https://github.com/HenrikBengtsson/doFuture
Source code: https://github.com/cran/doFuture
Date/Publication: 2020-09-24 08:00:12 UTC
Number of recursive dependencies: 18

Run revdep_details(, "doFuture") for more info

checking tests ... ``` ... [19:44:18.085] - force: FALSE [19:44:18.085] - relayed: [n=1] TRUE [19:44:18.085] - queued futures: [n=1] TRUE
- flush all [19:44:18.086] - relayed: [n=1] TRUE [19:44:18.086] - queued futures: [n=1] TRUE [19:44:18.087] signalConditionsASAP(NULL, pos=0) ... done [19:44:18.087] resolve() on list ... DONE [19:44:18.087] - collecting values of futures [19:44:18.088] signalConditions() ... [19:44:18.088] - include = 'immediateCondition' [19:44:18.088] - exclude = [19:44:18.089] - resignal = FALSE [19:44:18.089] - Number of conditions: 12 [19:44:18.090] signalConditions() ... done [19:44:18.090] - accumulating results [19:44:18.091] - processing errors (handler = 'stop') Error in { : task 1 failed - "Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression" Calls: %dopar% -> Execution halted ```

dragon

Version: 1.0.5
GitHub: https://github.com/sjspielman/dragon
Source code: https://github.com/cran/dragon
Date/Publication: 2020-11-05 17:30:18 UTC
Number of recursive dependencies: 128

Run revdep_details(, "dragon") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘htmltools’ All declared Imports should be used.

drake

Version: 7.12.7
GitHub: https://github.com/ropensci/drake
Source code: https://github.com/cran/drake
Date/Publication: 2020-10-27 18:50:06 UTC
Number of recursive dependencies: 147

Run revdep_details(, "drake") for more info

checking tests ... ``` ... 3. drake:::process_targets(config) 4. drake:::run_backend(config) 5. drake:::drake_backend(config) 6. drake:::drake_backend_future(config) 7. drake:::ft_scan_workers(ids, config) 8. drake:::ft_scan_worker(id, config) 9. drake:::ft_check_target(target, id, config)
1. drake:::ft_do_target(target, id, config)
2. drake:::ft_build_target(target, id, running, protect, config)
3. drake:::ft_decide_worker(target, protect, config)
4. drake:::ft_launch_worker(target, meta, protect, config)
5. future::future(...)
6. future:::makeFuture(...)
7. future::SequentialFuture(..., envir = envir)
8. future::UniprocessFuture(...)
9. future::getGlobalsAndPackages(...)
10. future:::assert_no_references(globals, action = action)
══ DONE ════════════════════════════════════════════════════════════════════════ Error: Test failures Execution halted ```

EFAtools

Version: 0.3.0
GitHub: https://github.com/mdsteiner/EFAtools
Source code: https://github.com/cran/EFAtools
Date/Publication: 2020-11-04 18:00:02 UTC
Number of recursive dependencies: 88

Run revdep_details(, "EFAtools") for more info

checking installed package size ... NOTE installed size is 7.4Mb sub-directories of 1Mb or more: doc 1.0Mb libs 5.5Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

EpiNow2

Version: 1.2.1
GitHub: NA
Source code: https://github.com/cran/EpiNow2
Date/Publication: 2020-10-20 14:50:09 UTC
Number of recursive dependencies: 146

Run revdep_details(, "EpiNow2") for more info

checking tests ... ``` ... █ 1. ├─base::suppressWarnings(...) test-regional_runtimes.R:18:0 2. │ └─base::withCallingHandlers(...) 3. └─EpiNow2::regional_epinow(...) 4. ├─progressr::with_progress(...) 5. └─future.apply::future_lapply(...) 6. └─future.apply:::future_xapply(...) 7. └─future.apply:::getGlobalsAndPackagesXApply(...) 8. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals) 9. ├─base::system.time(...)
1. └─future:::assert_no_references(globals, action = action)
── Skipped tests ────────────────────────────────────────────────────────────── ● On CRAN (11)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-regional_runtimes.R:18:1): (code run outside of test_that())

[ FAIL 1 | WARN 0 | SKIP 11 | PASS 32 ] Error: Test failures Execution halted ```
checking package dependencies ... NOTE Package suggested but not available for checking: ‘EpiSoon’
checking installed package size ... NOTE installed size is 107.4Mb sub-directories of 1Mb or more: help 2.3Mb libs 104.8Mb

foieGras

Version: 0.6-9
GitHub: https://github.com/ianjonsen/foieGras
Source code: https://github.com/cran/foieGras
Date/Publication: 2020-07-22 21:50:02 UTC
Number of recursive dependencies: 124

Run revdep_details(, "foieGras") for more info

checking installed package size ... NOTE installed size is 38.3Mb sub-directories of 1Mb or more: libs 37.2Mb

forecastML

Version: 0.9.0
GitHub: https://github.com/nredell/forecastML
Source code: https://github.com/cran/forecastML
Date/Publication: 2020-05-07 15:10:17 UTC
Number of recursive dependencies: 99

Run revdep_details(, "forecastML") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dtplyr’ All declared Imports should be used.

furrr

Version: 0.2.1
GitHub: https://github.com/DavisVaughan/furrr
Source code: https://github.com/cran/furrr
Date/Publication: 2020-10-21 18:00:06 UTC
Number of recursive dependencies: 68

Run revdep_details(, "furrr") for more info

checking tests ... `` ... ERROR (test-future-pmap.R:5:3): future_pmap() matches pmap() for simple cases / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:14:3): names of.xare retained / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:29:3): future_pmap_dbl() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:39:3): future_pmap_int() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:49:3): future_pmap_lgl() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:59:3): future_pmap_chr() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:69:3): future_pmap_raw() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:78:3): names of.xare retained / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:88:3): future_pmap_dfr() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:98:3): future_pmap_dfc() works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:125:3): size one recycling works / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:168:3): named arguments can be passed through / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:179:3): arguments can be matched by name / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:189:3): unused components can be absorbed / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:201:3): globals in.xand.yare found (#16) / strategy - multisession / cores - 2 ERROR (test-future-pmap.R:233:3): globals in.l` are only exported to workers that use them ERROR (test-future-walk.R:3:3): walk functions work / strategy - multisession / cores - 2

[ FAIL 70 | WARN 2 | SKIP 1 | PASS 706 ] Error: Test failures Execution halted ```

future.apply

Version: 1.6.0
GitHub: https://github.com/HenrikBengtsson/future.apply
Source code: https://github.com/cran/future.apply
Date/Publication: 2020-07-01 07:50:02 UTC
Number of recursive dependencies: 14

Run revdep_details(, "future.apply") for more info

checking examples ... ERROR ``` ... > ### Name: future_by > ### Title: Apply a Function to a Data Frame Split by Factors via Futures > ### Aliases: future_by > > ### ** Examples > > ## --------------------------------------------------------- > ## by() > ## --------------------------------------------------------- > library(datasets) ## warpbreaks > library(stats) ## lm() > > y0 <- by(warpbreaks, warpbreaks[,"tension"],
- function(x) lm(breaks ~ wool, data = x))
  
  plan(multisession) y1 <- future_by(warpbreaks, warpbreaks[,"tension"],
- function(x) lm(breaks ~ wool, data = x)) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.004 0 0.004 Execution halted ```
checking tests ... ... [20:01:06.690] Exporting '...future.FUN' (329.08 KiB) to cluster node #1 ... [20:01:06.733] Exporting '...future.FUN' (329.08 KiB) to cluster node #1 ... DONE [20:01:06.733] Exporting '...future.elements_ii' (80 bytes) to cluster node #1 ... [20:01:06.734] Exporting '...future.elements_ii' (80 bytes) to cluster node #1 ... DONE [20:01:06.735] Exporting '...future.seeds_ii' (0 bytes) to cluster node #1 ... [20:01:06.736] Exporting '...future.seeds_ii' (0 bytes) to cluster node #1 ... DONE [20:01:06.737] Exporting '...future.globals.maxSize' (0 bytes) to cluster node #1 ... [20:01:06.738] Exporting '...future.globals.maxSize' (0 bytes) to cluster node #1 ... DONE [20:01:06.738] Exporting 5 global objects (329.16 KiB) to cluster node #1 ... DONE [20:01:06.740] MultisessionFuture started [20:01:06.740] Chunk #1 of 2 ... DONE [20:01:06.741] Chunk #2 of 2 ... [20:01:06.741] - seeds: <none> [20:01:06.749] getGlobalsAndPackages() ... [20:01:06.750] - globals passed as-is: [5] '...', '...future.FUN', '...future.elements_ii', '...future.seeds_ii', '...future.globals.maxSize' [20:01:06.751] Resolving globals: FALSE [20:01:06.751] Tweak future expression to call with '...' arguments ... [20:01:06.752] Tweak future expression to call with '...' arguments ... DONE [20:01:06.753] Checking for globals with references (future.globals.onReference = "error") ...Error: Detected a non-exportable reference ('externalptr') in one of the globals (<unknown>) used in the future expression Timing stopped at: 0.007 0 0.007 Execution halted

future.batchtools

Version: 0.9.0
GitHub: https://github.com/HenrikBengtsson/future.batchtools
Source code: https://github.com/cran/future.batchtools
Date/Publication: 2020-04-14 18:40:03 UTC
Number of recursive dependencies: 35

Run revdep_details(, "future.batchtools") for more info

checking tests ... ... > str(list(x = x)) List of 1 $ x:List of 3 ..$ a: chr "integer" ..$ c: chr "character" ..$ c: chr "list" > > y0 <- lapply(x, FUN = base::vector, length = 2L) > str(list(y0 = y0)) List of 1 $ y0:List of 3 ..$ a: int [1:2] 0 0 ..$ c: chr [1:2] "" "" ..$ c:List of 2 .. ..$ : NULL .. ..$ : NULL > > y <- flapply(x, FUN = base::vector, length = 2L) Error: Detected a non-exportable reference ('externalptr') in one of the globals (<unknown>) used in the future expression Timing stopped at: 0.001 0.001 0.002 Execution halted

future.callr

Version: 0.5.0
GitHub: https://github.com/HenrikBengtsson/future.callr
Source code: https://github.com/cran/future.callr
Date/Publication: 2019-09-28 04:40:07 UTC
Number of recursive dependencies: 19

Run revdep_details(, "future.callr") for more info

checking tests ... ... [20:05:51.791] } [20:05:51.791] else { [20:05:51.791] ...future.result["stdout"] <- base::list(NULL) [20:05:51.791] } [20:05:51.791] base::close(...future.stdout) [20:05:51.791] ...future.stdout <- NULL [20:05:51.791] } [20:05:51.791] ...future.result$conditions <- ...future.conditions [20:05:51.791] ...future.result [20:05:51.791] } [20:05:51.877] Launched future (PID=44721) [20:05:51.881] getGlobalsAndPackages() ... [20:05:51.882] Searching for globals... [20:05:51.891] - globals found: [6] 'FUN', '[[', 'x', 'ii', '...', '.Internal' [20:05:51.891] Searching for globals ... DONE [20:05:51.892] Resolving globals: FALSE [20:05:51.893] Tweak future expression to call with '...' arguments ... [20:05:51.893] Tweak future expression to call with '...' arguments ... DONE [20:05:51.895] Checking for globals with references (future.globals.onReference = "error") ...Error: Detected a non-exportable reference ('externalptr' of class 'processx_connection') in one of the globals (<unknown>) used in the future expression Timing stopped at: 0.014 0.001 0.014 Execution halted

GetBCBData

Version: 0.5
GitHub: https://github.com/msperlin/GetBCBData
Source code: https://github.com/cran/GetBCBData
Date/Publication: 2019-04-23 10:10:29 UTC
Number of recursive dependencies: 106

Run revdep_details(, "GetBCBData") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RCurl’ ‘lubridate’ ‘readr’ ‘stats’ All declared Imports should be used.

glmmboot

Version: 0.5.1
GitHub: https://github.com/ColmanHumphrey/glmmboot
Source code: https://github.com/cran/glmmboot
Date/Publication: 2020-03-30 08:50:02 UTC
Number of recursive dependencies: 74

Run revdep_details(, "glmmboot") for more info

checking tests ... ``` ... 1. ├─testthat::expect_error(...) test-bootstrap_model.R:199:4 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat:::.capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─glmmboot::bootstrap_model(...) 7. └─glmmboot:::bootstrap_runner(...) 8. └─future.apply::future_lapply(...) 9. └─future.apply:::future_xapply(...)
1. └─future.apply:::getGlobalsAndPackagesXApply(...)
2. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
3. ├─base::system.time(...)
4. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ FAILURE (test-bootstrap_model.R:184:5): bootstrap_model parallelism modes FAILURE (test-bootstrap_model.R:199:5): bootstrap_model parallelism modes

[ FAIL 2 | WARN 0 | SKIP 0 | PASS 61 ] Error: Test failures Execution halted ```

googleTagManageR

Version: 0.1.6
GitHub: NA
Source code: https://github.com/cran/googleTagManageR
Date/Publication: 2020-10-05 13:20:10 UTC
Number of recursive dependencies: 68

Run revdep_details(, "googleTagManageR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘assertthat’ ‘future’ ‘httr’ ‘jsonlite’ All declared Imports should be used.

grattan

Version: 1.9.0.0
GitHub: https://github.com/HughParsonage/grattan
Source code: https://github.com/cran/grattan
Date/Publication: 2020-07-13 14:20:06 UTC
Number of recursive dependencies: 118

Run revdep_details(, "grattan") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'taxstats', 'taxstats1516'

gtfs2gps

Version: 1.3-2
GitHub: https://github.com/ipeaGIT/gtfs2gps
Source code: https://github.com/cran/gtfs2gps
Date/Publication: 2020-11-05 17:30:12 UTC
Number of recursive dependencies: 78

Run revdep_details(, "gtfs2gps") for more info

checking tests ... ``` ... 7. ├─base::withVisible(function_list[k]) 8. └─function_list[k] 9. └─gtfs2gps::gtfs2gps(., parallel = TRUE, spatial_resolution = 15)
1. ├─%>%(...)
2. │ └─base::eval(lhs, parent, parent)
3. │ └─base::eval(lhs, parent, parent)
4. └─furrr::future_map(...)
5. └─furrr:::furrr_map_template(...)
6. └─furrr:::furrr_template(...)
7. └─furrr:::get_globals_and_packages(...)
8. └─future::getGlobalsAndPackages(fn, envir = env_fn, globals = TRUE)
9. ├─base::system.time(...)
10. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ Warning (test_gtfs2gps.R:71:5): gtfs2gps ERROR (test_gtfs2gps.R:71:5): gtfs2gps

[ FAIL 1 | WARN 1 | SKIP 0 | PASS 158 ] Error: Test failures Execution halted ```

gWQS

Version: 3.0.0
GitHub: NA
Source code: https://github.com/cran/gWQS
Date/Publication: 2020-06-23 13:00:03 UTC
Number of recursive dependencies: 106

Run revdep_details(, "gWQS") for more info

checking examples ... ERROR ``` ... > > ### ** Examples > > # we save the names of the mixture variables in the variable "toxic_chems" > toxic_chems = names(wqs_data)[1:34] > > # To run a linear model and save the results in the variable "results". This linear model > # (family = gaussian) will rank/standardize variables in quartiles (q = 4), perform a > # 40/60 split of the data for training/validation (validation = 0.6), and estimate weights > # over 2 bootstrap samples (b = 2; in practical applications at least 100 bootstraps > # should be used). Weights will be derived from mixture effect parameters that are positive > # (b1_pos = TRUE). A unique seed was specified (seed = 2016) so this model will be > # reproducible, and plots describing the variable weights and linear relationship will be > # generated as output (plots = TRUE). In the end tables describing the weights values and > # the model parameters with the respectively statistics are generated in the plots window > # (tables = TRUE): > results = gwqs(y ~ wqs, mix_name = toxic_chems, data = wqs_data, q = 4, validation = 0.6,
- b = 2, b1_pos = TRUE, b1_constr = FALSE, family = gaussian, seed = 2016) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.057 0.004 0.061 Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.

hal9001

Version: 0.2.6
GitHub: https://github.com/tlverse/hal9001
Source code: https://github.com/cran/hal9001
Date/Publication: 2020-06-27 04:50:07 UTC
Number of recursive dependencies: 94

Run revdep_details(, "hal9001") for more info

checking tests ... ``` ...

── Warning (test-single_lambda.R:26:3): a single glmnet object is output ─────── failure_message is missing, with no default.

── Warning (test-single_lambda.R:29:3): cv.glmnet object is not output ───────── failure_message is missing, with no default.

── Warning (test-x_unpenalized.R:22:3): [train] The coefficient is not penalized failure_message is missing, with no default.

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-cv_lasso.R:67:1): (code run outside of test_that()) Warning (test-hal_big.R:26:1): (code run outside of test_that()) ERROR (test-reduce_basis_filter.R:120:1): (code run outside of test_that()) Warning (test-single_lambda.R:26:3): a single glmnet object is output Warning (test-single_lambda.R:29:3): cv.glmnet object is not output Warning (test-x_unpenalized.R:22:3): [train] The coefficient is not penalized heavily

[ FAIL 2 | WARN 4 | SKIP 0 | PASS 30 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 5.5Mb

IFAA

Version: 1.0.0
GitHub: https://github.com/gitlzg/IFAA
Source code: https://github.com/cran/IFAA
Date/Publication: 2020-11-04 15:00:09 UTC
Number of recursive dependencies: 39

Run revdep_details(, "IFAA") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘expm’ ‘rlecuyer’ All declared Imports should be used.

iml

Version: 0.10.1
GitHub: https://github.com/christophM/iml
Source code: https://github.com/cran/iml
Date/Publication: 2020-09-24 12:30:14 UTC
Number of recursive dependencies: 159

Run revdep_details(, "iml") for more info

checking examples ... ERROR ... > eff$predict(c(5, 6, 7)) [1] 20.86399 20.79626 26.31479 > > # You can reuse the pdp object for other features: > eff$set.feature("lstat") > plot(eff) > > # Only plotting the aggregated partial dependence: > eff <- FeatureEffect$new(mod, feature = "crim", method = "pdp") > eff$plot() > > # Only plotting the individual conditional expectation: > eff <- FeatureEffect$new(mod, feature = "crim", method = "ice") > eff$plot() > > # Accumulated local effects and partial dependence plots support up to two > # features: > eff <- FeatureEffect$new(mod, feature = c("crim", "lstat")) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals (‘FUN’ of class ‘function’) used in the future expression Timing stopped at: 0.002 0 0.002 Execution halted
checking tests ... ``` ... ERROR (test-FeatureEffect.R:373:3): method='ale' works for 2D numerical ERROR (test-FeatureEffect.R:438:3): iml::FeatureEffect with method='ale' equal to ALEPLot::ALEPlot ERROR (test-FeatureEffect.R:565:3): method='ale' works for 2D numerical x categorical ERROR (test-FeatureEffects.R:13:3): FeatureEffect (pdp only) works for single output and single feature ERROR (test-FeatureImp.R:11:3): FeatureImp works for single output ERROR (test-FeatureImp.R:30:3): FeatureImp works for single output with single repetition ERROR (test-FeatureImp.R:42:3): FeatureImp with difference ERROR (test-FeatureImp.R:60:3): FeatureImp with 0 model error ERROR (test-FeatureImp.R:77:3): FeatureImp works for single output and function as loss ERROR (test-FeatureImp.R:90:3): FeatureImp works for multiple output ERROR (test-FeatureImp.R:107:3): Works for different repetitions. ERROR (test-FeatureImp.R:123:3): Model receives data.frame without additional columns ERROR (test-FeatureImp.R:140:3): Feature Importance 0 ERROR (test-Interaction.R:12:3): Interaction works for all features ERROR (test-Interaction.R:22:3): Interaction works for 2-way interactions ERROR (test-Interaction.R:48:3): Interaction for multiclass Warning (test-LocalModel.R:52:3): LocalModel works for multiple output

[ FAIL 17 | WARN 2 | SKIP 11 | PASS 395 ] Error: Test failures Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘keras’ All declared Imports should be used.

infercnv

Version: 1.6.0
GitHub: https://github.com/broadinstitute/inferCNV
Source code: https://github.com/cran/infercnv
Date/Publication: 2020-10-27
Number of recursive dependencies: 127

Run revdep_details(, "infercnv") for more info

checking examples ... ERROR ``` ...
- ref_title="References (Cells)",
- cluster_by_groups=TRUE,
- x.center=1,
- x.range="auto",
- hclust_method='ward.D',
- color_safe_pal=FALSE,
- output_filename="infercnv",
- output_format="png",
- png_res=300,
- dynamic_resize=0
- ) INFO [2020-11-09 20:41:21] ::plot_cnv:Start INFO [2020-11-09 20:41:21] ::plot_cnv:Current data dimensions (r,c)=4613,20 Total=94613.7345076583 Min=0.459691019720342 Max=2.53323815685956. INFO [2020-11-09 20:41:21] ::plot_cnv:Depending on the size of the matrix this may take a moment. INFO [2020-11-09 20:41:21] plot_cnv(): auto thresholding at: (0.510779 , 1.489221) Warning in png(paste(out_dir, paste(output_filename, ".png", sep = ""), : unable to open connection to X11 display '' Error in .External2(C_X11, paste0("png::", filename), g$width, g$height, : unable to start device PNG Calls: plot_cnv -> png Execution halted ```
checking installed package size ... NOTE installed size is 5.0Mb sub-directories of 1Mb or more: extdata 3.1Mb
checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘HiddenMarkov:::makedensity’ See the note in ?`:::` about the use of this operator.

inlinedocs

Version: 2019.12.5
GitHub: https://github.com/tdhock/inlinedocs
Source code: https://github.com/cran/inlinedocs
Date/Publication: 2019-12-05 23:30:07 UTC
Number of recursive dependencies: 7

Run revdep_details(, "inlinedocs") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘R.methodsS3’

ItemResponseTrees

Version: 0.2.5
GitHub: https://github.com/hplieninger/ItemResponseTrees
Source code: https://github.com/cran/ItemResponseTrees
Date/Publication: 2020-05-06 22:00:15 UTC
Number of recursive dependencies: 123

Run revdep_details(, "ItemResponseTrees") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'fit.irtree_model.Rd': ‘[MplusAutomation:MplusAutomation-package]{MplusAutomation}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```

JointAI

Version: 1.0.0
GitHub: https://github.com/nerler/JointAI
Source code: https://github.com/cran/JointAI
Date/Publication: 2020-08-31 06:40:09 UTC
Number of recursive dependencies: 136

Run revdep_details(, "JointAI") for more info

checking tests ... ``` ... Warning (test-printfcts.R:6:3): lme model Warning (test-printfcts.R:6:3): lme model Warning (test-printfcts.R:6:3): lme model Warning (test-printfcts.R:20:3): mlogitmm Warning (test-printfcts.R:20:3): mlogitmm Warning (test-printfcts.R:20:3): mlogitmm Warning (test-survival.R:5:3): Joint model with ordinal covariate works Warning (test-survival.R:5:3): Joint model with ordinal covariate works Warning (test-survival.R:5:3): Joint model with ordinal covariate works Warning (test-survival.R:15:3): JM Warning (test-survival.R:15:3): JM Warning (test-survival.R:15:3): JM Warning (test-survival.R:15:3): JM Warning (test-survreg.R:124:3): prediction works Warning (test-survreg.R:124:3): prediction works Warning (test-survreg.R:132:3): residuals Warning (test-survreg.R:133:3): residuals

[ FAIL 6 | WARN 35 | SKIP 16 | PASS 1042 ] Error: Test failures Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘mathjaxr’ All declared Imports should be used.

jstor

Version: 0.3.9
GitHub: https://github.com/ropensci/jstor
Source code: https://github.com/cran/jstor
Date/Publication: 2020-06-04 04:50:03 UTC
Number of recursive dependencies: 74

Run revdep_details(, "jstor") for more info

checking examples ... ERROR ``` Running examples in ‘jstor-Ex.R’ failed The error most likely occurred in:

Name: jst_subset_ngrams

Title: Define a subset of ngrams

Aliases: jst_subset_ngrams

** Examples

create sample output

tmp <- tempdir() jst_import_zip(jst_example("pseudo_dfr.zip"), + import_spec = jst_define_import(book = jst_get_book), + out_file = "test", out_path = tmp) Processing files for book_chapter with functions jst_get_book Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.06 0.007 0.066 Execution halted ```
checking tests ... ``` ... ── Skipped tests ────────────────────────────────────────────────────────────── ● Downloading was disabled (1) ● This test is stupid, should be improved. It depends on the console width which is not a good idea. (1) ● empty test (2)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-ngram.R:32:3): subsetting ngrams works Warning (test-writing-to-file.R:21:3): writing correct results to file works ERROR (test-writing-to-file.R:35:3): writing to file in parallel works ERROR (test-writing-to-file.R:48:3): not writing column names works ERROR (test-writing-to-file.R:63:3): writing error messages to file works ERROR (test-writing-to-file.R:88:3): import wrapper works with column names ERROR (test-writing-to-file.R:101:3): import wrapper works without column names ERROR (test-writing-to-file.R:114:3): files_per_batch works ERROR (test-writing-to-file.R:130:3): n_batches works for n > 1 ERROR (test-zip.R:29:3): importing from zip works

[ FAIL 9 | WARN 1 | SKIP 4 | PASS 239 ] Error: Test failures Execution halted ```

kernelboot

Version: 0.1.7
GitHub: https://github.com/twolodzko/kernelboot
Source code: https://github.com/cran/kernelboot
Date/Publication: 2020-02-13 23:10:03 UTC
Number of recursive dependencies: 65

Run revdep_details(, "kernelboot") for more info

checking tests ... ``` ...
- simply check if it fails
- stopifnot( kernelboot(mtcars, function(data) coef(lm(mpg ~ disp + hp + drat, data = data)),
- R = 10, parallel = TRUE, workers = 2L)$param$parallel )
- check reproducibility
- set.seed(0xBEEF)
- s1 <- kernelboot(mtcars, function(data) coef(lm(mpg ~ disp + hp + drat, data = data)),
- R = 10, parallel = TRUE, workers = 2L)
- set.seed(0xBEEF)
- s2 <- kernelboot(mtcars, function(data) coef(lm(mpg ~ disp + hp + drat, data = data)),
- R = 10, parallel = TRUE, workers = 2L)
- stopifnot( all.equal(s1, s2) )
- } Error: Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression Timing stopped at: 0.012 0 0.012 Execution halted ```

lidR

Version: 3.0.4
GitHub: https://github.com/Jean-Romain/lidR
Source code: https://github.com/cran/lidR
Date/Publication: 2020-10-10 21:40:03 UTC
Number of recursive dependencies: 160

Run revdep_details(, "lidR") for more info

checking tests ... ``` ... Warning (test-grid_terrain.R:120:3): grid_terrain returns the same both with LAScatalog and LAS Warning (test-grid_terrain.R:120:3): grid_terrain returns the same both with LAScatalog and LAS Warning (test-grid_terrain.R:120:3): grid_terrain returns the same both with LAScatalog and LAS Warning (test-grid_terrain.R:120:3): grid_terrain returns the same both with LAScatalog and LAS Warning (test-grid_terrain.R:120:3): grid_terrain returns the same both with LAScatalog and LAS ERROR (test-lasclip.R:129:3): lasclip clips point with SpatialPoints on LAS and LAScatalog ERROR (test-lasclip.R:228:3): lasclip supports multiple queries ERROR (test-lasclip.R:283:3): lasclip returns an empty point cloud for empty multiple queries Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog Warning (test-lasnormalize.R:76:3): lasnormalize work with a catalog ERROR (test-tree_hulls.R:48:3): tree_hulls works with a custom metrics ERROR (test-tree_metrics.R:29:3): tree_metrics works with a LAScatalog FAILURE (test-tree_metrics.R:54:3): tree_metrics throw an error if no treeID

[ FAIL 23 | WARN 90 | SKIP 1 | PASS 1069 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 12.2Mb sub-directories of 1Mb or more: extdata 1.1Mb libs 8.7Mb

lmtp

Version: 0.0.5
GitHub: NA
Source code: https://github.com/cran/lmtp
Date/Publication: 2020-07-18 09:10:02 UTC
Number of recursive dependencies: 87

Run revdep_details(, "lmtp") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘nnls’ ‘utils’ All declared Imports should be used.

methyvim

Version: 1.11.0
GitHub: https://github.com/nhejazi/methyvim
Source code: https://github.com/cran/methyvim
Date/Publication: 2020-04-27
Number of recursive dependencies: 211

Run revdep_details(, "methyvim") for more info

checking examples ... ERROR ``` ... Loading required package: bumphunter Loading required package: foreach Loading required package: iterators Loading required package: locfit locfit 1.5-9.4 2020-03-24 Warning: Package 'methyvimData' is deprecated and will be removed from Bioconductor version 3.13 > data(grsExample) > var_int <- as.numeric(colData(grsExample)[, 1]) > # TMLE procedure for the ATE parameter over M-values with Limma filtering > methyvim_out_ate <- suppressWarnings(
- methyvim(
- data_grs = grsExample, sites_comp = 25, var_int = var_int,
- vim = "ate", type = "Mval", filter = "limma", filter_cutoff = 0.1,
- parallel = FALSE, tmle_type = "glm"
- )
- ) Timing stopped at: 0.004 0.003 0.007 Error in updt[[as.integer(i)]] <- .error(msg) : attempt to select more than one element in integerOneIndex Execution halted ```
checking tests ... ``` ... 3. └─methyvim::methyvim(...) 4. ├─BiocParallel::bplapply(...) 5. └─BiocParallel::bplapply(...) 6. ├─BiocParallel::bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM) 7. └─BiocParallel::bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM) 8. └─base::tryCatch(...) 9. └─base:::tryCatchList(expr, classes, parentenv, handlers)
1. └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
2. └─value[3L]
── Warning (test-set_parallel.R:9:3): registers BiocParallel::DoparParam by defa Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'.

══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-cluster_sites.R:4:1): (code run outside of test_that()) ERROR (test-methyvim.R:13:1): (code run outside of test_that()) Warning (test-set_parallel.R:9:3): registers BiocParallel::DoparParam by default for parallel=TRUE

[ FAIL 1 | WARN 2 | SKIP 0 | PASS 34 ] Error: Test failures Execution halted ```
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘tmle.npvi’

MineICA

Version: 1.30.0
GitHub: NA
Source code: https://github.com/cran/MineICA
Date/Publication: 2020-10-27
Number of recursive dependencies: 210

Run revdep_details(, "MineICA") for more info

checking examples ... ERROR ``` ... > > ### * Examples > > ## generate a data > set.seed(2004); > M <- matrix(rnorm(50006,sd=0.3),ncol=10) > M[1:100,1:3] <- M[1:100,1:3] + 2 > M[1:200,1:3] <- M[1:200,4:6] +1 > > ## Random initializations are used for each iteration of FastICA > ## Estimates are clustered using hierarchical clustering with average linkage > res <- clusterFastICARuns(X=M, nbComp=2, alg.type="deflation",
- nbIt=3, funClus="hclust", method="average") FastICA iteration 1 Warning: executing %dopar% sequentially: no parallel backend registered FastICA iteration 2 FastICA iteration 3 Warning: Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'. Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.021 0.007 0.045 Execution halted ```
checking running R code from vignettes ... `` ‘MineICA.Rnw’... failed ERROR Errors in running code in vignettes: when running code in ‘MineICA.Rnw’ ... [1] "Comp 1" Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale. Warning:axis.ticks.marginis deprecated. Please setmarginproperty ofaxis.text` instead Warning in grDevices::png(..., res = dpi, units = "in") : unable to open connection to X11 display ''

When sourcing ‘MineICA.R’: Error: task 1 failed - "unable to start device PNG" Execution halted ```
checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'Alist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'Slist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'class-IcaSet.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'getComp.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'runAn.Rd': ‘[Category:class-GOHyperGParams]{GOHyperGParams}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking for missing documentation entries ... WARNING Undocumented S4 classes: ‘MineICAParams’ All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking package dependencies ... NOTE ``` Package which this enhances but not available for checking: ‘doMC’

Depends: includes the non-default packages: 'BiocGenerics', 'Biobase', 'plyr', 'ggplot2', 'scales', 'foreach', 'xtable', 'biomaRt', 'gtools', 'GOstats', 'cluster', 'marray', 'mclust', 'RColorBrewer', 'colorspace', 'igraph', 'Rgraphviz', 'graph', 'annotate', 'Hmisc', 'fastICA', 'JADE' Adding so many packages to the search path is excessive and importing selectively is preferable. ```
checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘biomaRt’ ‘GOstats’ ‘cluster’ ‘mclust’ ‘igraph’ A package should be listed in only one of these fields.
checking dependencies in R code ... NOTE 'library' or 'require' call to ‘GOstats’ which was already attached by Depends. Please remove these calls from your code. Namespace in Imports field not imported from: ‘lumiHumanAll.db’ All declared Imports should be used. Packages in Depends field not imported from: ‘GOstats’ ‘Hmisc’ ‘JADE’ ‘RColorBrewer’ ‘Rgraphviz’ ‘annotate’ ‘biomaRt’ ‘cluster’ ‘colorspace’ ‘fastICA’ ‘foreach’ ‘ggplot2’ ‘graph’ ‘gtools’ ‘igraph’ ‘marray’ ‘mclust’ ‘methods’ ‘plyr’ ‘scales’ ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. ':::' calls which should be '::': ‘Biobase:::annotation<-’ ‘Biobase:::validMsg’ ‘fpc:::pamk’ ‘lumi:::getChipInfo’ ‘mclust:::adjustedRandIndex’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘Biobase:::isValidVersion’ See the note in ?`:::` about the use of this operator.
checking R code for possible problems ... NOTE ... position_jitter pushViewport quantile rainbow_hcl rcorr read.table reorder scale_colour_gradientn scale_colour_manual scale_fill_manual scale_linetype_manual scale_shape_manual scale_x_continuous scale_x_discrete scale_y_continuous shapiro.test sigCategories terrain_hcl theme theme_bw title tkplot.fit.to.screen unit useMart validObject vcount viewport wilcox.test write.table xlab xtable Consider adding importFrom("grDevices", "cm.colors", "dev.off", "graphics.off", "heat.colors", "pdf") importFrom("graphics", "abline", "axis", "frame", "hist", "layout", "legend", "mtext", "par", "plot.new", "points", "title") importFrom("methods", "callNextMethod", "new", "validObject") importFrom("stats", "aggregate", "as.dendrogram", "as.dist", "as.hclust", "chisq.test", "cor", "cor.test", "cutree", "dist", "hclust", "kmeans", "kruskal.test", "lm", "median", "na.omit", "order.dendrogram", "p.adjust", "quantile", "reorder", "shapiro.test", "wilcox.test") importFrom("utils", "capture.output", "combn", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').

mlr3

Version: 0.8.0
GitHub: https://github.com/mlr-org/mlr3
Source code: https://github.com/cran/mlr3
Date/Publication: 2020-10-21 09:10:02 UTC
Number of recursive dependencies: 60

Run revdep_details(, "mlr3") for more info

checking examples ... ERROR ``` ...
- lrn("classif.featureless", predict_type = "prob"),
- lrn("classif.rpart", predict_type = "prob")
- )
  
  design = benchmark_grid(
- tasks = list(tsk("sonar"), tsk("spam")),
- learners = learners,
- resamplings = rsmp("cv", folds = 3)
- )
  
  print(design) task learner resampling 1: 2: 3: 4:
  
  bmr = benchmark(design) INFO [20:56:37.772] Benchmark with 12 resampling iterations Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.005 0 0.006 Execution halted ```
checking tests ... ``` ... ERROR (test_parallel.R:5:3): parallel resample ERROR (test_parallel.R:20:3): parallel benchmark Warning (test_parallel.R:38:3): real parallel resample ERROR (test_parallel.R:38:3): real parallel resample ERROR (test_parallel.R:56:3): parallel seed ERROR (test_resample.R:6:3): resample ERROR (test_resample.R:34:3): resample with no or multiple measures ERROR (test_resample.R:51:3): as_benchmark_result.ResampleResult ERROR (test_resample.R:67:3): discarding model ERROR (test_resample.R:77:3): inputs are cloned ERROR (test_resample.R:87:3): memory footprint ERROR (test_resample.R:99:3): predict_type is checked ERROR (test_resample.R:112:3): seeds work identical sequential/parallel ERROR (test_resample.R:134:3): empty train/predict sets ERROR (test_resultdata.R:9:3): results are ordered ERROR (test_resultdata.R:47:3): mlr3tuning use case ERROR (test_resultdata.R:78:3): predict set selection

[ FAIL 37 | WARN 1 | SKIP 0 | PASS 5728 ] Error: Test failures Execution halted ```

mlr3db

Version: 0.2.0
GitHub: https://github.com/mlr-org/mlr3db
Source code: https://github.com/cran/mlr3db
Date/Publication: 2020-09-28 08:10:02 UTC
Number of recursive dependencies: 66

Run revdep_details(, "mlr3db") for more info

checking tests ... ``` ...
1. └─future:::assert_no_references(globals, action = action)
── ERROR (test_train_predict.R:15:3): resample work ──────────────────────────── Error: Detected a non-exportable reference ('externalptr') in one of the globals ('future.call.arguments' of class 'DotDotDotList') used in the future expression Backtrace: █ 1. └─mlr3::resample(task, learner, mlr3::rsmp("cv", folds = 3)) test_train_predict.R:15:2 2. └─future.apply::future_lapply(...) 3. └─future.apply:::future_xapply(...) 4. └─future.apply:::getGlobalsAndPackagesXApply(...) 5. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals) 6. ├─base::system.time(...) 7. └─future:::assert_no_references(globals, action = action)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test_reconnect.R:34:3): resampling ERROR (test_train_predict.R:15:3): resample work

[ FAIL 2 | WARN 0 | SKIP 0 | PASS 432 ] Error: Test failures Execution halted ```

origami

Version: 1.0.3
GitHub: https://github.com/tlverse/origami
Source code: https://github.com/cran/origami
Date/Publication: 2020-01-16 22:40:02 UTC
Number of recursive dependencies: 87

Run revdep_details(, "origami") for more info

checking tests ... ``` ...

── Warning (test-future_plan.R:26:1): (code run outside of test_that()) ────── prediction from a rank-deficient fit may be misleading

── Warning (test-future_plan.R:26:1): (code run outside of test_that()) ────── prediction from a rank-deficient fit may be misleading

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-folds.R:56:1): (code run outside of test_that()) Warning (test-future_plan.R:21:1): (code run outside of test_that()) Warning (test-future_plan.R:21:1): (code run outside of test_that()) Warning (test-future_plan.R:21:1): (code run outside of test_that()) Warning (test-future_plan.R:21:1): (code run outside of test_that()) Warning (test-future_plan.R:26:1): (code run outside of test_that()) Warning (test-future_plan.R:26:1): (code run outside of test_that()) Warning (test-future_plan.R:26:1): (code run outside of test_that()) Warning (test-future_plan.R:26:1): (code run outside of test_that())

[ FAIL 1 | WARN 8 | SKIP 0 | PASS 22 ] Error: Test failures Execution halted ```
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘glmnet’

pavo

Version: 2.4.0
GitHub: https://github.com/rmaia/pavo
Source code: https://github.com/cran/pavo
Date/Publication: 2020-02-08 16:20:08 UTC
Number of recursive dependencies: 100

Run revdep_details(, "pavo") for more info

checking whether package ‘pavo’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/pavo/new/pavo.Rcheck/00install.out’ for details.

PCRedux

Version: 1.0-6
GitHub: https://github.com/PCRuniversum/PCRedux
Source code: https://github.com/cran/PCRedux
Date/Publication: 2020-03-06 08:10:02 UTC
Number of recursive dependencies: 122

Run revdep_details(, "PCRedux") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘FFTrees’

PeakSegDisk

Version: 2020.8.13
GitHub: https://github.com/tdhock/PeakSegDisk
Source code: https://github.com/cran/PeakSegDisk
Date/Publication: 2020-08-14 04:40:06 UTC
Number of recursive dependencies: 65

Run revdep_details(, "PeakSegDisk") for more info

checking examples ... ERROR ``` ...
- r("chr1", 2, 3, 18),
- r("chr1", 3, 4, 15),
- r("chr1", 4, 5, 20),
- r("chr1", 5, 6, 2)
- )
  
  data.dir <- file.path(tempfile(), "chr1-0-6") dir.create(data.dir, recursive=TRUE) write.table(
- supp, file.path(data.dir, "coverage.bedGraph"),
- sep="\t", row.names=FALSE, col.names=FALSE)
  
  register a parallel future plan to compute the first two
  
  penalties in parallel during the sequential search.
  
  if(interactive() && requireNamespace("future"))future::plan("multiprocess")
  
  Compute optimal up-down model with 2 peaks via sequential search.
  
  fit <- PeakSegDisk::sequentialSearch_dir(data.dir, 2L) Loading required namespace: future.apply Error: Detected a non-exportable reference (‘externalptr’) in one of the globals (‘FUN’ of class ‘function’) used in the future expression Timing stopped at: 0.001 0.002 0.003 Execution halted ```
checking tests ... ``` ...
1. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
2. ├─base::system.time(...)
3. └─future:::assert_no_references(globals, action = action)
── Warning (test-CRAN-wc2int.R:32:3): wc2int error for no size ───────────────── NAs introduced by coercion

[1] "/var/folders/7j/bq7gdv517tv9bb54j2tfnt3w0000gn/T//Rtmpu71VKi/file363125abb95f/H3K27ac-H3K4me3_TDHAM_BP/samples/Mono1_H3K27ac/S001YW_NCMLS/problems/chr11:60000-580000/coverage.bedGraph" ══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-CRAN-PeakSegFPOP_dir.R:29:3): large penalty should not crash solver Warning (test-CRAN-PeakSegFPOP_dir.R:34:3): large penalty with temp file Warning (test-CRAN-PeakSegFPOP_dir.R:34:3): large penalty with temp file Warning (test-CRAN-PeakSegFPOP_dir.R:55:3): empty timing.tsv is fine Warning (test-CRAN-PeakSegFPOP_dir.R:61:3): empty coverage.bedGraph is an error Warning (test-CRAN-PeakSegFPOP_dir.R:61:3): empty coverage.bedGraph is an error FAILURE (test-CRAN-sequentialSearch.R:23:3): sequential search with too many peaks is an error Warning (test-CRAN-wc2int.R:32:3): wc2int error for no size

[ FAIL 1 | WARN 7 | SKIP 0 | PASS 65 ] Error: Test failures Execution halted ```

penaltyLearning

Version: 2020.5.13
GitHub: https://github.com/tdhock/penaltyLearning
Source code: https://github.com/cran/penaltyLearning
Date/Publication: 2020-05-14 16:20:02 UTC
Number of recursive dependencies: 64

Run revdep_details(, "penaltyLearning") for more info

checking tests ... ``` ... 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. ├─base::with(...) test-errors.R:125:4 7. └─base::with.default(...) 8. └─base::eval(substitute(expr), data, enclos = parent.frame()) 9. └─base::eval(substitute(expr), data, enclos = parent.frame())
1. └─penaltyLearning::IntervalRegressionCV(...)
2. └─future.apply:::LAPPLY(...)
3. └─future.apply:::future_xapply(...)
4. └─future.apply:::getGlobalsAndPackagesXApply(...)
5. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
6. ├─base::system.time(...)
7. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-demo8.R:8:1): (code run outside of test_that()) FAILURE (test-errors.R:110:3): error for constant features FAILURE (test-errors.R:124:3): error for NA and constant features

[ FAIL 3 | WARN 0 | SKIP 0 | PASS 166 ] Error: Test failures Execution halted ```

phylolm

Version: 2.6.2
GitHub: https://github.com/lamho86/phylolm
Source code: https://github.com/cran/phylolm
Date/Publication: 2020-06-22 05:10:08 UTC
Number of recursive dependencies: 45

Run revdep_details(, "phylolm") for more info

checking examples ... ERROR ``` Running examples in ‘phylolm-Ex.R’ failed The error most likely occurred in:

Name: phyloglm

Title: Phylogenetic Generalized Linear Model

Aliases: phyloglm

** Examples

set.seed(123456) tre = rtree(50) x = rTrait(n=1,phy=tre) X = cbind(rep(1,50),x) y = rbinTrait(n=1,phy=tre, beta=c(-1,0.5), alpha=1 ,X=X) dat = data.frame(trait01 = y, predictor = x) fit = phyloglm(trait01~predictor,phy=tre,data=dat,boot=100) Error: Detected a non-exportable reference (‘externalptr’ of class ‘RegisteredNativeSymbol’) in one of the globals () used in the future expression Timing stopped at: 0.036 0.005 0.041 Execution halted ```
checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘geiger’, ‘caper’

plumber

Version: 1.0.0
GitHub: https://github.com/rstudio/plumber
Source code: https://github.com/cran/plumber
Date/Publication: 2020-09-14 21:40:02 UTC
Number of recursive dependencies: 68

Run revdep_details(, "plumber") for more info

checking tests ... ``` ... Warning (???): accessing two images created using promises does not create an error FAILURE (test-async.R:356:3): accessing two images created using promises does not create an error Warning (???): accessing two images created using promises does not create an error FAILURE (test-async.R:361:3): accessing two images created using promises does not create an error FAILURE (test-async.R:393:3): accessing two images created using promises does not create an error FAILURE (test-async.R:395:3): accessing two images created using promises does not create an error FAILURE (test-async.R:396:3): accessing two images created using promises does not create an error FAILURE (test-async.R:398:3): accessing two images created using promises does not create an error FAILURE (test-async.R:400:3): accessing two images created using promises does not create an error FAILURE (test-async.R:401:3): accessing two images created using promises does not create an error FAILURE (test-async.R:404:3): accessing two images created using promises does not create an error Warning (test-endpoint-aroundexec.R:137:3): not producing an image produces an error FAILURE (test-endpoint-aroundexec.R:137:3): not producing an image produces an error FAILURE (test-endpoint-aroundexec.R:142:3): not producing an image produces an error Warning (test-zzz-plumb_api.R:64:3): all example plumber apis plumb Warning (test-zzzz-include.R:29:5): Includes work FAILURE (test-zzzz-include.R:30:5): Includes work

[ FAIL 12 | WARN 5 | SKIP 12 | PASS 1842 ] Error: Test failures Execution halted ```

promises

Version: 1.1.1
GitHub: https://github.com/rstudio/promises
Source code: https://github.com/cran/promises
Date/Publication: 2020-06-09 21:50:02 UTC
Number of recursive dependencies: 55

Run revdep_details(, "promises") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘purrr’

Prostar

Version: 1.22.0
GitHub: NA
Source code: https://github.com/cran/Prostar
Date/Publication: 2020-10-27
Number of recursive dependencies: 281

Run revdep_details(, "Prostar") for more info

checking package dependencies ... ERROR ``` Package required and available but unsuitable version: ‘DAPAR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

PSCBS

Version: 0.65.0
GitHub: https://github.com/HenrikBengtsson/PSCBS
Source code: https://github.com/cran/PSCBS
Date/Publication: 2019-05-05 22:40:09 UTC
Number of recursive dependencies: 90

Run revdep_details(, "PSCBS") for more info

checking examples ... ERROR ... 2 <NA> 1 20585463.34 29320105 102 1.0304 3 <NA> 1 29320104.86 67893865 296 -0.0238 4 <NA> 1 67893865.37 81348129 101 -1.0803 5 <NA> 1 81348129.20 99910827 200 -0.0612 6 <NA> NA NA NA NA NA 7 <NA> 2 55167.82 20585463 198 0.0096 8 <NA> 2 20585463.34 29320105 102 1.0304 9 <NA> 2 29320104.86 67893865 296 -0.0238 10 <NA> 2 67893865.37 81348129 101 -1.0803 11 <NA> 2 81348129.20 99910827 200 -0.0612 > plotTracks(fit, subset=NULL, lwd=2, Clim=c(-3,3)) > > > # Segmenting multiple chromosomes at once > chromosomeWG <- rep(1:2, each=J) > xWG <- rep(x, times=2) > yWG <- rep(y, times=2) > fitWG <- segmentByCBS(yWG, chromosome=chromosomeWG, x=xWG) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals (<unknown>) used in the future expression Timing stopped at: 0.005 0.001 0.006 Execution halted
checking tests ... ``` ... > dataS <- dropSegmentationOutliers(data) > dataS <- dataS[seq(from=1, to=nrow(data), by=5),] > nSegs <- 4L > str(dataS) 'data.frame': 14670 obs. of 6 variables: $ chromosome: int 1 1 1 1 1 1 1 1 1 1 ... $ x : int 1145994 2941694 3710825 4240737 4276892 4464544 4714611 5095111 5034491 5158416 ... $ CT : num 1.63 1.4 1.41 1.17 1.16 ... $ betaT : num 0.7574 0.169 0.2357 0.2604 0.0576 ... $ CN : num 2.36 2.13 2.26 2.01 2.32 ... $ betaN : num 0.8274 0.5072 0.1671 0.1609 0.0421 ... > # Segment known regions > knownSegments <- data.frame(
- chromosome = c( 1, 1, 1),
- start = c( -Inf, NA, 141510003),
- end = c(120992603, NA, +Inf)
- )
  
  fit <- segmentByPairedPSCBS(dataS, knownSegments=knownSegments, avgDH="median", seed=0xBEEF) Error: Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression Timing stopped at: 0.015 0.001 0.017 Execution halted ```
checking running R code from vignettes ... ``` ... Segmenting multiple segments on current chromosome... Number of segments: 3 Timing stopped at: 0.023 0 0.022 Segmenting multiple segments on current chromosome...done Segmenting by CBS...done

When sourcing ‘CBS.R’: Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Execution halted when running code in ‘PairedPSCBS.tex.rsp’ ... Number of segments: 3 Timing stopped at: 0.047 0.001 0.048 Segmenting multiple segments on current chromosome...done Segmenting by CBS...done Identification of change points by total copy numbers...done Segmenting paired tumor-normal signals using Paired PSCBS...done

When sourcing ‘PairedPSCBS.R’: Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Execution halted ```

QDNAseq

Version: 1.26.0
GitHub: https://github.com/ccagc/QDNAseq
Source code: https://github.com/cran/QDNAseq
Date/Publication: 2020-10-27
Number of recursive dependencies: 72

Run revdep_details(, "QDNAseq") for more info

checking examples ... ERROR ``` ... The error most likely occurred in:

Name: callBins

Title: Call aberrations from segmented copy number data

Aliases: callBins callBins,QDNAseqCopyNumbers-method

Keywords: manip

** Examples

data(LGG150) readCounts <- LGG150 readCountsFiltered <- applyFilters(readCounts) 38,819 total bins 38,819 of which in selected chromosomes 36,722 of which with reference sequence 33,347 final bins readCountsFiltered <- estimateCorrection(readCountsFiltered) Calculating correction for GC content and mappability Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.154 0.007 0.161 Execution halted ```
checking tests ... ... > # This scripts asserts that for each processing step of QDNAseq > # the output/results are reproducible (numerically equal). > ###################################################################### > library("QDNAseq") > options("QDNAseq::verbose"=FALSE) > > # Load data > data(LGG150) > data <- LGG150 > > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > # TRUTH > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > # Filter out "bad" bins > dataF <- applyFilters(data, residual=TRUE, blacklist=TRUE) > > # Correct read counts as a function of GC content and mappability > dataC <- correctBins(dataF) Error: Detected a non-exportable reference ('externalptr') in one of the globals (<unknown>) used in the future expression Timing stopped at: 0.16 0.005 0.165 Execution halted
checking running R code from vignettes ... ``` ‘QDNAseq.Rnw’... failed ERROR Errors in running code in vignettes: when running code in ‘QDNAseq.Rnw’ ... experimentData: use 'experimentData(object)' Annotation:

png("rawprofile.png") Warning in png("rawprofile.png") : unable to open connection to X11 display ''

When sourcing ‘QDNAseq.R’: Error: unable to start device PNG Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

qgcomp

Version: 2.6.0
GitHub: NA
Source code: https://github.com/cran/qgcomp
Date/Publication: 2020-10-06 05:10:02 UTC
Number of recursive dependencies: 132

Run revdep_details(, "qgcomp") for more info

checking tests ... ``` ...
- }
  
  Xnm = c(paste0("x", 1:6))
  
  repit <- function(i){
- dat = dgm(50)
- m1 = qgcomp.noboot(y~., expnms=Xnm, data = dat, family=gaussian(), q=4)
- m2 = qgcomp.boot( y~., expnms=Xnm, data = dat, family=gaussian(), q=4, B=5, parallel=TRUE)
- res = c(m1$coef, m1$var.coef, 1(m1$pval>0.05), with(m1, ci.coef[1]<2 & ci.coef[2]>2), m2$coef, m2$var.coef, 1(m2$pval>0.05), with(m2, ci.coef[2,1]<2 & ci.coef[2,2]>2))
- names(res) <- c("psiint", "psi", "varint", "var", "powint", "pow", "cover", "b.psiint", "b.psi", "b.varint", "b.var", "b.powint", "b.pow", "b.cover")
- res
- }
  
  res = mclapply(1:1000, repit)
  
  res = lapply(1:2, repit) Error: Detected a non-exportable reference ('externalptr') in one of the globals () used in the future expression In addition: Warning message: Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'. Timing stopped at: 0.019 0.006 0.026 Execution halted ```

rangeMapper

Version: 0.3-7
GitHub: https://github.com/valcu/rangeMapper
Source code: https://github.com/cran/rangeMapper
Date/Publication: 2019-10-25 18:20:02 UTC
Number of recursive dependencies: 101

Run revdep_details(, "rangeMapper") for more info

checking examples ... ERROR ``` ... MAP_tables species_richness;median_body_size;median_body_mass;median_clutch_size METADATA_RANGES Area,Median_x,Median_y,Min_x,Min_y,Max_x,Max_y +__+ > > > lmSlope = function(formula, data) {
- fm = try(lm(formula, data = data), silent = TRUE)
- if (inherits(fm, "try-error"))
- res = NA else res = coef(fm)[2]
- as.numeric(res)
- }
  
  Subsetting by Species and Assembladge
  
  rangeMap.save(con, FUN = lmSlope, biotab = "biotab", biotrait = "body_mass",
- tableName = "slope_bodyMass_clutchSize", formula = log(body_mass) ~ clutch_size,
- list(MAP_species_richness = "species_richness >= 5",
- BIO_biotab = "body_size > 15"
- ), overwrite = TRUE) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals (‘FUN’ of class ‘function’) used in the future expression Timing stopped at: 0.006 0.001 0.008 Execution halted ```
checking tests ... ``` ... 9. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
1. └─doFuture:::getGlobalsAndPackages_doFuture(...)
2. └─future::getGlobalsAndPackages(expr, envir = globals_envir, globals = TRUE)
3. ├─base::system.time(...)
4. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-1_projectINI.R:76:2): Pipeline works forward only ERROR (test-1_projectINI.R:76:2): Pipeline works forward only ERROR (test-2_processRanges.R:26:2): ONE SpPolyDF NO metadata ERROR (test-2_processRanges.R:47:2): ONE SpPolyDF WITH metadata ERROR (test-2_processRanges.R:71:2): MULTIPLE SpPolyDF-s WITH metadata ERROR (test-2_processRanges.R:89:3): Process Ranges works parallel ERROR (test-3_output.R:7:1): (code run outside of test_that()) ERROR (test-4_save.R:7:1): (code run outside of test_that())

[ FAIL 7 | WARN 1 | SKIP 0 | PASS 14 ] Error: Test failures In addition: Warning message: call dbDisconnect() when finished working with a connection Execution halted ```

rBiasCorrection

Version: 0.2.3
GitHub: https://github.com/kapsner/rBiasCorrection
Source code: https://github.com/cran/rBiasCorrection
Date/Publication: 2020-09-23 04:50:02 UTC
Number of recursive dependencies: 134

Run revdep_details(, "rBiasCorrection") for more info

checking examples ... ERROR ``` ... > > gdat <- rBiasCorrection::example._plot.df_agg > > coef_h <- rBiasCorrection::example._plot_coef_h > coef_c <- rBiasCorrection::example._plot_coef_c > > create_exampleplot(
- data = gdat,
- coef_hyper = coef_h,
- coef_cubic = coef_c,
- plot_height = 5,
- plot_width = 7.5,
- plot_textsize = 1,
- filename = paste0(tempdir(), "/exampleplot.png")
- ) Warning in grDevices::png(..., res = dpi, units = "in") : unable to open connection to X11 display '' Error in .External2(C_X11, paste0("png::", filename), g$width, g$height, : unable to start device PNG Calls: create_exampleplot -> -> dev -> Execution halted ```
checking tests ... ``` ...
1. └─ggplot2::ggsave(...)
2. └─ggplot2:::dev(...)
3. └─grDevices::png(..., res = dpi, units = "in")
── Skipped tests ────────────────────────────────────────────────────────────── ● On CRAN (2)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-algorithm_minmax_FALSE.R:47:5): algorithm test, type 1, minmax = FALSE ERROR (test-algorithm_minmax_FALSE.R:332:5): algorithm test, type 1, minmax = FALSE selection_method = RelError ERROR (test-algorithm_minmax_TRUE.R:47:5): algorithm test, type 1, minmax = TRUE ERROR (test-algorithm_minmax_TRUE.R:340:5): algorithm test, type 1, minmax = TRUE selection_method = RelError ERROR (test-biascorrection.R:15:3): correct functioning of BiasCorrection, data type 1 ERROR (test-plotting.R:49:5): plotting_utility ERROR (test-plotting.R:122:5): createbarerrorplots Warning (test-plotting.R:227:5): create_exampleplot ERROR (test-plotting.R:227:5): create_exampleplot

[ FAIL 8 | WARN 1 | SKIP 2 | PASS 44 ] Error: Test failures Execution halted ```

regmedint

Version: 0.1.0
GitHub: https://github.com/kaz-yos/regmedint
Source code: https://github.com/cran/regmedint
Date/Publication: 2020-05-11 11:00:02 UTC
Number of recursive dependencies: 111

Run revdep_details(, "regmedint") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Deriv’ All declared Imports should be used.
checking R code for possible problems ... NOTE fit_mreg: no visible global function definition for ‘as.formula’ fit_yreg: no visible global function definition for ‘as.formula’ Undefined global functions or variables: as.formula Consider adding importFrom("stats", "as.formula") to your NAMESPACE file.

robotstxt

Version: 0.7.13
GitHub: https://github.com/ropensci/robotstxt
Source code: https://github.com/cran/robotstxt
Date/Publication: 2020-09-03 19:30:02 UTC
Number of recursive dependencies: 67

Run revdep_details(, "robotstxt") for more info

checking tests ... ``` ... 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─robotstxt::paths_allowed(...) test_paths_allowed.R:1039:4 7. └─robotstxt::get_robotstxts(...) 8. └─future.apply:::apply_fun(parameter_list, FUN = to_be_applied_fun) 9. └─future.apply:::future_xapply(...)
1. └─future.apply:::getGlobalsAndPackagesXApply(...)
2. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
3. ├─base::system.time(...)
4. └─future:::assert_no_references(globals, action = action)
── Skipped tests ────────────────────────────────────────────────────────────── ● empty test (3)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test_http_event_handling.R:158:3): client error ERROR (test_http_event_handling.R:196:3): server error ERROR (test_paths_allowed.R:1037:3): paths_allowed() works also with 'downloaded' robots.txt files

[ FAIL 3 | WARN 0 | SKIP 3 | PASS 257 ] Error: Test failures Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

sapfluxnetr

Version: 0.1.1
GitHub: https://github.com/sapfluxnet/sapfluxnetr
Source code: https://github.com/cran/sapfluxnetr
Date/Publication: 2020-08-27 12:50:02 UTC
Number of recursive dependencies: 78

Run revdep_details(, "sapfluxnetr") for more info

checking data for non-ASCII characters ... NOTE Note: found 4 marked UTF-8 strings

sctransform

Version: 0.3.1
GitHub: https://github.com/ChristophH/sctransform
Source code: https://github.com/cran/sctransform
Date/Publication: 2020-10-08 12:00:02 UTC
Number of recursive dependencies: 71

Run revdep_details(, "sctransform") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmGamPoi’

seer

Version: 1.1.5
GitHub: NA
Source code: https://github.com/cran/seer
Date/Publication: 2020-06-08 05:00:02 UTC
Number of recursive dependencies: 112

Run revdep_details(, "seer") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MASS’ All declared Imports should be used.

Seurat

Version: 3.2.2
GitHub: https://github.com/satijalab/seurat
Source code: https://github.com/cran/Seurat
Date/Publication: 2020-09-26 04:30:12 UTC
Number of recursive dependencies: 230

Run revdep_details(, "Seurat") for more info

checking tests ... ``` ... Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression Backtrace: █ 1. └─Seurat:::NNHelper(...) test_objects.R:236:0 2. ├─base::do.call(what = "AnnoyNN", args = args) 3. └─Seurat:::AnnoyNN(...) 4. └─Seurat:::AnnoySearch(...) 5. └─future.apply::future_lapply(...) 6. └─future.apply:::future_xapply(...) 7. └─future.apply:::getGlobalsAndPackagesXApply(...) 8. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals) 9. ├─base::system.time(...)
1. └─future:::assert_no_references(globals, action = action)
══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test_differential_expression.R:104:1): (code run outside of test_that()) ERROR (test_objects.R:236:1): (code run outside of test_that())

[ FAIL 2 | WARN 0 | SKIP 0 | PASS 330 ] Error: Test failures Execution halted ```
checking package dependencies ... NOTE Package suggested but not available for checking: ‘loomR’
checking installed package size ... NOTE installed size is 11.1Mb sub-directories of 1Mb or more: R 1.2Mb libs 9.1Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘loomR’

shiny

Version: 1.5.0
GitHub: https://github.com/rstudio/shiny
Source code: https://github.com/cran/shiny
Date/Publication: 2020-06-23 13:30:03 UTC
Number of recursive dependencies: 102

Run revdep_details(, "shiny") for more info

checking tests ... ``` ... Warning (test-mock-session.R:89:3): renderImage supported ERROR (test-mock-session.R:89:3): renderImage supported Warning (test-plot-coordmap.R:23:3): ggplot coordmap ERROR (test-plot-coordmap.R:23:3): ggplot coordmap Warning (test-plot-coordmap.R:85:3): ggplot coordmap with facet_wrap ERROR (test-plot-coordmap.R:85:3): ggplot coordmap with facet_wrap Warning (test-plot-coordmap.R:134:3): ggplot coordmap with facet_grid ERROR (test-plot-coordmap.R:134:3): ggplot coordmap with facet_grid Warning (test-plot-coordmap.R:219:3): ggplot coordmap with 2D facet_grid ERROR (test-plot-coordmap.R:219:3): ggplot coordmap with 2D facet_grid Warning (test-plot-coordmap.R:269:3): ggplot coordmap with various data types ERROR (test-plot-coordmap.R:269:3): ggplot coordmap with various data types Warning (test-plot-coordmap.R:323:3): ggplot coordmap with various scales and coords ERROR (test-plot-coordmap.R:323:3): ggplot coordmap with various scales and coords Warning (test-plot-coordmap.R:381:3): ggplot coordmap maintains discrete limits ERROR (test-plot-coordmap.R:381:3): ggplot coordmap maintains discrete limits ERROR (test-test-server.R:303:3): testServer works with async

[ FAIL 9 | WARN 8 | SKIP 7 | PASS 1006 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 10.8Mb sub-directories of 1Mb or more: R 1.7Mb www 8.1Mb

shinyrecap

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/shinyrecap
Date/Publication: 2019-01-19 23:40:03 UTC
Number of recursive dependencies: 92

Run revdep_details(, "shinyrecap") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘CARE1’ ‘LCMCR’ ‘coda’ ‘conting’ ‘dga’ ‘future’ ‘ggplot2’ ‘ipc’ ‘promises’ ‘reshape’ ‘shinycssloaders’ ‘testthat’ All declared Imports should be used.

sigminer

Version: 1.0.19
GitHub: https://github.com/ShixiangWang/sigminer
Source code: https://github.com/cran/sigminer
Date/Publication: 2020-09-28 07:30:03 UTC
Number of recursive dependencies: 197

Run revdep_details(, "sigminer") for more info

checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: extdata 3.7Mb

simhelpers

Version: 0.1.0
GitHub: https://github.com/meghapsimatrix/simhelpers
Source code: https://github.com/cran/simhelpers
Date/Publication: 2020-03-31 15:00:06 UTC
Number of recursive dependencies: 101

Run revdep_details(, "simhelpers") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘magrittr’ ‘purrr’ ‘rlang’ ‘utils’ All declared Imports should be used.

skpr

Version: 0.64.2
GitHub: https://github.com/tylermorganwall/skpr
Source code: https://github.com/cran/skpr
Date/Publication: 2020-03-04 20:20:02 UTC
Number of recursive dependencies: 137

Run revdep_details(, "skpr") for more info

checking installed package size ... NOTE installed size is 41.4Mb sub-directories of 1Mb or more: libs 39.9Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘nlme’ All declared Imports should be used.

solitude

Version: 1.1.1
GitHub: https://github.com/talegari/solitude
Source code: https://github.com/cran/solitude
Date/Publication: 2020-09-17 10:10:07 UTC
Number of recursive dependencies: 137

Run revdep_details(, "solitude") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘lgr’ All declared Imports should be used.

spacey

Version: 0.1.1
GitHub: https://github.com/mikemahoney218/spacey
Source code: https://github.com/cran/spacey
Date/Publication: 2020-03-14 18:50:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "spacey") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘rgdal’ All declared Imports should be used.

spatialwarnings

Version: 2.0.0
GitHub: https://github.com/spatial-ews/spatialwarnings
Source code: https://github.com/cran/spatialwarnings
Date/Publication: 2020-05-14 17:10:06 UTC
Number of recursive dependencies: 82

Run revdep_details(, "spatialwarnings") for more info

checking examples ... ERROR ``` Running examples in ‘spatialwarnings-Ex.R’ failed The error most likely occurred in:

Name: generic_sews

Title: Generic Spatial Early-Warning signals

Aliases: generic_sews

** Examples

data(serengeti) gen_indic <- generic_sews(serengeti, subsize = 5, + moranI_coarse_grain = TRUE) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.226 0.016 0.241 Execution halted ```
checking tests ... ``` ...
1. └─future.apply:::future_xapply(...)
2. └─future.apply:::getGlobalsAndPackagesXApply(...)
3. └─future::getGlobalsAndPackages(expr, envir = envir, globals = globals)
4. ├─base::system.time(...)
5. └─future:::assert_no_references(globals, action = action)
── Skip (test-workflows.R:33:3): The workflow functions work ─────────────────── Reason: On CRAN

── Skipped tests ────────────────────────────────────────────────────────────── ● On CRAN (2)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-display_matrix.R:36:5): display_matrix methods work ERROR (test-indicator_values-plosone.R:39:5): results matches those in PLOS One ERROR (test-nullfun.R:17:3): All null model methods work ERROR (test-size-reporting.R:9:3): Correct sizes are reported

[ FAIL 4 | WARN 0 | SKIP 2 | PASS 61 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 5.7Mb sub-directories of 1Mb or more: libs 4.7Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tidyr’ All declared Imports should be used.

sperrorest

Version: 3.0.1
GitHub: https://github.com/giscience-fsu/sperrorest
Source code: https://github.com/cran/sperrorest
Date/Publication: 2020-05-26 20:10:02 UTC
Number of recursive dependencies: 67

Run revdep_details(, "sperrorest") for more info

checking examples ... ERROR ``` ... > > library(rpart) > mypred_part <- function(object, newdata) predict(object, newdata)[, 2] > ctrl <- rpart.control(cp = 0.005) # show the effects of overfitting > # show the effects of overfitting > fit <- rpart(fo, data = ecuador, control = ctrl) > > ### Non-spatial cross-validation: > mypred_part <- function(object, newdata) predict(object, newdata)[, 2] > nsp_res <- sperrorest(
- data = ecuador, formula = fo,
- model_fun = rpart,
- model_args = list(control = ctrl),
- pred_fun = mypred_part,
- progress = TRUE,
- smp_fun = partition_cv,
- smp_args = list(repetition = 1:2, nfold = 3)
- ) Error: Detected a non-exportable reference (‘externalptr’) in one of the globals () used in the future expression Timing stopped at: 0.047 0 0.047 Execution halted ```
checking tests ... ``` ... ERROR (test-sperrorest-summary.R:39:3): sperrorest() produces correct output for binary response ERROR (test-sperrorest-summary.R:70:3): sperrorest() produces correct output for binary response ERROR (test-sperrorest-summary.R:89:3): summary.sperroresterror() produces correct output for binary response ERROR (test-sperrorest-summary.R:114:3): summary.sperroresterror() with pooled = FALSE produces correct output for binary response ERROR (test-sperrorest-summary.R:184:3): sperrorest() produces correct output for binary response for non-default arguments ERROR (test-sperrorest.R:37:3): output type (= list) for different logical combinations of error_rep and error_fold for par_mode = 'foreach' on LDA example ERROR (test-sperrorest.R:76:3): output length of list is correct for par_mode = 'foreach' on rpart example ERROR (test-sperrorest.R:99:3): sperrorest() variable importance (foreach) ERROR (test-sperrorest.R:124:3): sperrorest() produces correct output for binary response ERROR (test-sperrorest.R:150:3): sperrorest() when pred_fun = NULL ERROR (test-sperrorest.R:178:3): sperrorest correctly updates resampling object when using a sub-sample

[ FAIL 12 | WARN 0 | SKIP 11 | PASS 21 ] Error: Test failures Execution halted ```

stars

Version: 0.4-3
GitHub: https://github.com/r-spatial/stars
Source code: https://github.com/cran/stars
Date/Publication: 2020-07-08 11:20:03 UTC
Number of recursive dependencies: 136

Run revdep_details(, "stars") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘starsdata’
checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: doc 1.9Mb nc 4.5Mb

steps

Version: 1.1.0
GitHub: NA
Source code: https://github.com/cran/steps
Date/Publication: 2020-03-23 16:40:02 UTC
Number of recursive dependencies: 72

Run revdep_details(, "steps") for more info

checking tests ... ``` ... Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:352:3): simulation_results classes work Warning (test_simulation_results_class.R:358:3): simulation_results classes work Warning (test_simulation_results_class.R:358:3): simulation_results classes work Warning (test_simulation_results_class.R:358:3): simulation_results classes work ERROR (test_simulation_results_class.R:481:3): simulation_results classes work

[ FAIL 1 | WARN 16922 | SKIP 0 | PASS 45 ] Error: Test failures Execution halted ```

tableschema.r

Version: 1.1.1
GitHub: https://github.com/frictionlessdata/tableschema-r
Source code: https://github.com/cran/tableschema.r
Date/Publication: 2020-03-12 12:40:02 UTC
Number of recursive dependencies: 68

Run revdep_details(, "tableschema.r") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘iterators’ All declared Imports should be used.
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘parsedate’

treeHMM

Version: 0.1.1
GitHub: NA
Source code: https://github.com/cran/treeHMM
Date/Publication: 2019-12-12 17:10:02 UTC
Number of recursive dependencies: 11

Run revdep_details(, "treeHMM") for more info

checking whether package ‘treeHMM’ can be installed ... WARNING Found the following significant warnings: Warning: Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'. See ‘/c4/home/henrik/repositories/future/revdep/checks/treeHMM/new/treeHMM.Rcheck/00install.out’ for details.
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used.

TSstudio

Version: 0.1.6
GitHub: https://github.com/RamiKrispin/TSstudio
Source code: https://github.com/cran/TSstudio
Date/Publication: 2020-01-21 05:30:02 UTC
Number of recursive dependencies: 140

Run revdep_details(, "TSstudio") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘forecastHybrid’ All declared Imports should be used.

txshift

Version: 0.3.4
GitHub: https://github.com/nhejazi/txshift
Source code: https://github.com/cran/txshift
Date/Publication: 2020-09-25 13:50:02 UTC
Number of recursive dependencies: 100

Run revdep_details(, "txshift") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’
checking Rd cross-references ... NOTE Unknown package ‘sl3’ in Rd xrefs

MINATILO/FUTURE documentation built on Dec. 17, 2021, 1:21 a.m.

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MINATILO/FUTURE Unified Parallel and Distributed Processing in R for Everyone

revdep/R_FUTURE_GLOBALS_ONREFERENCE=error/problems.md In MINATILO/FUTURE: Unified Parallel and Distributed Processing in R for Everyone

adept

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alookr

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AlpsNMR

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aroma.core

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BAMBI

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batchtools

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bcmaps

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blockCV

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brms

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cSEM

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delayed

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dhReg

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disk.frame

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Name: cmap2

Title: 'cmap2' a function to two disk.frames

Aliases: cmap2 map2 map_by_chunk_id

** Examples

doFuture

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EFAtools

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MINATILO/FUTURE
Unified Parallel and Distributed Processing in R for Everyone

revdep/R_FUTURE_GLOBALS_ONREFERENCE=error/problems.md
In MINATILO/FUTURE: Unified Parallel and Distributed Processing in R for Everyone