Files in MRCToxBioinformatics/Proteomics_data_analysis
Basic proteomics data analysis tutorials
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
Markdowns/.gitignore
Markdowns/LFQ.Rmd
Markdowns/LFQ.html
Markdowns/LFQ_alternative_normalisation.Rmd
Markdowns/LFQ_alternative_normalisation.html
Markdowns/LFQ_maxlfq.Rmd
Markdowns/LFQ_maxlfq.html
Markdowns/Markdowns.Rproj
Markdowns/SILAC.Rmd
Markdowns/SILAC.html
Markdowns/SILAC.pdf
Markdowns/SILAC_differential_abundance.html
Markdowns/SILAC_incorporation.Rmd
Markdowns/SILAC_incorporation.html
Markdowns/Stats_diff_abundance_LFQ.Rmd
Markdowns/Stats_diff_abundance_LFQ.html
Markdowns/Stats_diff_abundance_SILAC.Rmd
Markdowns/Stats_diff_abundance_SILAC.html
Markdowns/Stats_diff_abundance_TMT.Rmd
Markdowns/Stats_diff_abundance_TMT.html
Markdowns/TMT.Rmd
Markdowns/TMT.html
Markdowns/TMT_phospho.Rmd
Markdowns/TMT_phospho.html
Markdowns/TMT_phospho_stats.Rmd
Markdowns/TMT_phospho_stats.html
Markdowns/TMT_phospho_stats.nb.html
Markdowns/Visualisation.Rmd
Markdowns/Visualisation.html
Markdowns/bib.json
Markdowns/results/benchmark_tmt_phospho_psm_filt.rds
Markdowns/results/lfq_pep_restricted.rds
Markdowns/results/lfq_prot_robust.rds
Markdowns/results/lfq_prot_robust_glyco_norm.rds
Markdowns/results/pep_res.rds
Markdowns/results/phospho_sites.rds
Markdowns/results/prot_res.rds
Markdowns/results/psm_filt.rds
Markdowns/results/tmt_protein.rds
Markdowns/results/total.rds
NAMESPACE
Proteomics.data.analysis.Rproj
README.Rmd
README.md
_config.yml
images/MRC_TU_Cambridge_identifier_horizontal_RGB2_a.png
images/UoC_logo.jpg
index.md
make_workshop_README
