Man pages for Mamie/scDNAmClock
Epigenetic clock on scMethyl-seq data
| as_df-methods | Convert methCall object to data frame |
| as_GRanges-methods | Convert methCall object to data frame |
| choose_k | Decide the rank of the truncated SVD based on Linderman 2018... |
| filter_sites-methods | Filter sites |
| join_meth_list | Join a list of methCall object by site |
| map_coord-methods | Liftover methCall object coordinate |
| methCall-class | An S4 class to store methylation call object |
| n_row-methods | Number of rows |
| PhenoAge | Compute DNAm PhenoAge |
| plot_coverage | Plot coverage distribution for a list of methCall objects |
| read_meth | Extract the relevant columns from the files |
| SVT_denoise | Denoise using truncated SVD |
| tidy_coef | Get coefficients from glmnet |
