Man pages for MarioniLab/sarlacc
Pipeline for Oxford Nanopore RNA-Seq Data Analysis
| adaptorAlign | Align adaptors to reads |
| barcodeAlign | Determine barcode identity |
| consensusReadSeq | Consensus read sequence |
| errorFinder | Find sequencing errors |
| expectedDist | Calculate expected distances |
| extractSubseq | Extract subsequence |
| filterReads | Filter out reads without adaptors |
| getAdaptorThresholds | Get score thresholds for adaptor alignments |
| getBarcodeThresholds | Get score thresholds for barcode alignments |
| homopolymerFinder | Find homopolymers |
| homopolymerMatcher | Match homopolymer lengths |
| multiReadAlign | Multiple read alignment |
| qualityAlign | Perform quality-based alignment |
| qualityMask | Mask bases by quality |
| realizeReads | Realize read sequences |
| sam2ranges | SAM to genomic ranges |
| tuneAlignment | Tune alignment parameters |
| umiGroup | Group equivalent UMIs |
