Man pages for MathieuGenu/geffaeR
Generic Function for Abundance Estimation with R
| ajout_obs | Adding observation on effort. |
| cds | Cds rstan script. |
| change_effort_varName | Standardisation of effort data column names. |
| change_obs_varName | Standardisation of observation data column names. |
| create_cds_project | Create cds project |
| DSM_pack_MOLMOL | Data list to create a DSM example |
| effort_example | Effort example data. |
| Europe | Europe land contour. |
| fit_all_dsm | Fit all possible model with the covariates given. |
| fit_variomodel | Fitting a variogram model. |
| get_mcmc_summary | Summarize mcmc output of stan. |
| lbrt93_proj | Projection in Lambert 93. |
| NEA | Northern East Atlantic land contour. |
| NEA_isobath100 | Northern East Atlantic isobath100. |
| NEA_isobath200 | Northern East Atlantic isobath200. |
| NEA_simplified_FR | Northern East Atlantic land contour simplified centered on... |
| observation_example | Observation example data. |
| plot_detection | Distance sampling analysis. |
| predict_abund | Predict density from dsm models estimated with fit_all_dsm. |
| predict_all | Predict density from dsm models estimated with fit_all_dsm. |
| predict_kriging | Get spatial density / Abundance prediction. |
| pred_map_dsm | Prediction map of fitted dsm model. |
| pred_splines | Prediction diagnostic. |
| prepare_data_effort | Preparation of effort data. |
| prepare_data_obs | Preparation of observation data. |
| prepare_soap | Prepare soap for dsm modelling |
| prep_predata | Creation of predata and data impuation of missing data. |
| quick_map_krig | Visualize kriging prediction. |
| shape_example | Shape-file example. |
| stan_cds | CDS Bayesian modelling from stan model. |
| variogram_intraTransect | Build a variogram object |
| verif_effort_obs | Compatibility verification between effort and observation... |
