API for MaximeWack/viroCapt
Viral capture analysis pipeline
| Global functions | |
|---|---|
| MA | Source code |
| clean_blat | Source code |
| cleaned_blat | Source code |
| compose | Source code |
| compose2 | Source code |
| compose_combn | Source code |
| create_profile | Source code |
| create_visu | Source code |
| downsample | Source code |
| extract_fasta | Source code |
| extract_features | Source code |
| extract_unaligned | Source code |
| filter_two_sides | Source code |
| find_concordant_positions | Source code |
| ggplot_depth | Source code |
| ggplot_final | Source code |
| limit_genotypes | Source code |
| normalise_depth | Source code |
| parse_cigar | Source code |
| plot_depth | Source code |
| plot_final | Source code |
| read_blat | Source code |
| read_depth | Source code |
| read_fasta | Source code |
| read_sam | Source code |
| read_summary | Source code |
| remove_homologs | Source code |
| summarise_blat | Source code |
| summarised_blat | Source code |
| tag_blat | Source code |
| visu | Source code |
| write_blat | Source code |
| write_consensus | Source code |
| write_fasta | Source code |
