API for Miswi/RiboCrypt
Interactive visualization in genomics
| Global functions | |
|---|---|
| DEG_plot | Man page Source code |
| DEG_plot_input_validation | Source code |
| DEG_server | Source code |
| DEG_ui | Source code |
| DE_model | Source code |
| DE_model_from_ctrl | Source code |
| DE_model_results | Source code |
| RiboCrypt_app | Man page Source code |
| addJSrender | Source code |
| addToImageButtonOptions | Source code |
| allsamples_enrich_bar_plot | Source code |
| allsamples_meta_stats | Source code |
| allsamples_meta_stats_shiny | Source code |
| allsamples_metadata_clustering | Source code |
| allsamples_observer_controller | Source code |
| allsamples_sidebar | Source code |
| analysis_server | Source code |
| analysis_ui | Source code |
| annotation_controller | Source code |
| annotation_track_allsamples | Source code |
| antisense | Man page Source code |
| automateTicks | Source code |
| automateTicksGMP | Source code |
| automateTicksLetters | Source code |
| automateTicksRNA | Source code |
| automateTicksX | Source code |
| beacon_main_api_url | Source code |
| bottom_panel_shiny | Source code |
| browseRC | Man page Source code |
| browser_allsamp_server | Source code |
| browser_allsamp_ui | Source code |
| browser_server | Source code |
| browser_track_panel_shiny | Source code |
| browser_ui | Source code |
| chain_ids_from_summary | Source code |
| check_plot_on_start | Source code |
| check_url_for_basic_parameters | Source code |
| check_url_for_go_on_init | Source code |
| click_plot_DEG_main_controller | Source code |
| click_plot_boxplot | Source code |
| click_plot_browser | Source code |
| click_plot_browser_allsamp_controller | Source code |
| click_plot_browser_main_controller | Source code |
| click_plot_browser_new_controller | Source code |
| click_plot_codon | Source code |
| click_plot_codon_main_controller | Source code |
| click_plot_heatmap_main_controller | Source code |
| clipboard_url_button | Source code |
| codon_filter_input_select | Source code |
| codon_score_input_select | Source code |
| codon_server | Source code |
| codon_ui | Source code |
| collection_dir_from_exp | Man page |
| collection_path_from_exp | Man page |
| collection_to_metawindow | Source code |
| collection_to_wide | Man page Source code |
| colour_bars | Source code |
| compute_collection_table | Man page Source code |
| compute_collection_table_shiny | Source code |
| condition_input_select | Source code |
| condition_update_select | Source code |
| createGeneModelPanel | Source code |
| createSeqPanelPattern | Man page Source code |
| createSinglePlot | Source code |
| custom_seq_track_panels | Source code |
| diff_method_input_select | Source code |
| distribution_plot | Source code |
| dt_fft | Source code |
| entity_identifier_categories_from_summary | Source code |
| entity_identifiers_from_summary | Source code |
| experiment_input_select | Source code |
| experiment_update_select | Source code |
| export_format_of_plot | Source code |
| extend_all_to | Source code |
| extend_needed | Source code |
| fastq_server | Source code |
| fastq_ui | Source code |
| fetchJS | Source code |
| fetch_JS_seq | Man page Source code |
| fetch_summary | Man page Source code |
| findPatterns | Source code |
| frame_type_select | Source code |
| frame_type_update_select | Source code |
| geneBoxFromRanges | Source code |
| geneTrackLayer | Man page Source code |
| gene_box_fix_overlaps | Source code |
| gene_input_select | Source code |
| gene_update_select | Source code |
| gene_update_select_heatmap | Source code |
| gene_update_select_internal | Source code |
| genomic_string_to_grl | Source code |
| getCoverageProfile | Man page |
| getIndexes | Man page Source code |
| getMetaCoverage | Source code |
| getPageFromURL | Source code |
| getPlotAnimate | Source code |
| getRelativeFrames | Source code |
| getRiboProfile | Source code |
| getStartWindow | Source code |
| getStopWindow | Source code |
| get_current_index | Source code |
| get_exp | Source code |
| get_fastq_page | Source code |
| get_gene_name_categories | Source code |
| get_gene_name_categories_collection | Source code |
| get_meta_browser_plot | Source code |
| get_meta_browser_plot_full | Man page Source code |
| ggplotlyHover | Man page Source code |
| hash_strings_browser | Source code |
| heatmap_color_select | Source code |
| heatmap_data | Source code |
| heatmap_region_select | Source code |
| heatmap_server | Source code |
| heatmap_ui | Source code |
| helper_button_redirect_call | Source code |
| kmer_update_select | Source code |
| library_input_select | Source code |
| library_update_select | Source code |
| lineDeSimplify | Source code |
| load_collection | Man page Source code |
| load_custom_regions | Source code |
| load_reads | Source code |
| make_rc_url | Man page Source code |
| make_summary_track | Source code |
| make_url_from_inputs | Source code |
| matchMultiplePatterns | Man page Source code |
| matchToGRanges | Man page Source code |
| matchWrapper | Source code |
| match_collection_to_exp | Source code |
| metadata_input_select | Source code |
| metadata_server | Source code |
| metadata_ui | Source code |
| model_categories_from_summary | Source code |
| model_formats_from_summary | Source code |
| model_identifiers_from_summary | Source code |
| model_urls_from_summary | Source code |
| module_protein | Source code |
| multiLib_to_metaWindow | Source code |
| multiOmicsController | Source code |
| multiOmicsControllerView | Source code |
| multiOmicsPlot_ORFikExp | Man page Source code |
| multiOmicsPlot_all_profiles | Source code |
| multiOmicsPlot_all_track_plots | Source code |
| multiOmicsPlot_animate | Man page Source code |
| multiOmicsPlot_bottom_panels | Source code |
| multiOmicsPlot_complete_plot | Source code |
| multiOmicsPlot_internal | Source code |
| multiOmicsPlot_list | Man page Source code |
| normalization_input_select | Source code |
| normalizations | Source code |
| normalize_collection | Man page Source code |
| observed_cds_annotation | Source code |
| observed_cds_heatmap | Source code |
| observed_cds_point | Source code |
| observed_exp_subset | Source code |
| observed_gene_heatmap | Source code |
| observed_translon_annotation | Source code |
| observed_tx_annotation | Source code |
| observed_uorf_annotation | Source code |
| org_and_study_changed_checker | Source code |
| organism_input_select | Man page Source code |
| overlaps_to_layers | Source code |
| pdb_exists | Source code |
| periodicity_plot | Source code |
| plotSeqPanel | Source code |
| predicted_translons_server | Source code |
| predicted_translons_ui | Source code |
| protein_struct_plot | Source code |
| protein_struct_render | Source code |
| quality_server | Source code |
| quality_ui | Source code |
| rc_header_image | Source code |
| rc_parameter_setup | Source code |
| rc_theme | Source code |
| rc_title | Source code |
| reactive_heatmap_plot | Source code |
| reactive_url | Source code |
| region_view_select | Source code |
| selectFrames | Source code |
| singlePlot_add_theme | Source code |
| singlePlot_select_plot_type | Source code |
| smoothenMultiSampCoverage | Source code |
| smoothenSingleSampCoverage | Source code |
| sra_search_server | Source code |
| sra_search_ui | Source code |
| startCoverage | Source code |
| stopCoverage | Source code |
| study_and_gene_observers | Source code |
| study_info_server | Source code |
| study_info_ui | Source code |
| summary_track_allsamples | Source code |
| trimOverlaps | Man page Source code |
| tutorial_server | Source code |
| tutorial_ui | Source code |
| tx_from_gene_list | Source code |
| tx_input_select | Source code |
| tx_update_select | Source code |
| update_rv | Source code |
| update_rv_changed | Source code |
| valuesToColors | Source code |
